Complex 4w2i
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.70 |
| System mass | 4555.29 kDa |
| Deposition year | 2014 |
| Molecule type | RNA/Protein |
| # RNA entities | 6 |
| Organism | Thermus |
| RCSB PDB Entry | 4w2i |
| Reference | Polikanov Yury S., Szal Teresa, Jiang Fuyan, Gupta Pulkit, Matsuda Ryoichi, Shiozuka Masataka, Steitz Thomas A., Vázquez-Laslop Nora, Mankin Alexander S.. . Negamycin Interferes with Decoding and Translocation by Simultaneous Interaction with rRNA and tRNA Molecular Cell |
| Compound | NEG |
| Residue | . / 3216 |
| Chain | PL / AA |
| Non-redundant | True |
| Interacting RNA chains | W/AW, A/AA |
| Volume | 630.78 Å3 |
| Hydrophobicity | 0.259 |
| Hydrophilicity | 1.219 |
| Buriedness | 0.767 |
| Don/acc character | 0.962 |
| SiteScore | 1.046 |
| D Score | 1.003 |
| Compound | NEG |
| Residue | . / 3218 |
| Chain | RL / AA |
| Non-redundant | False |
| Interacting RNA chains | A/AA |
| Volume | 183.50 Å3 |
| Hydrophobicity | 0.108 |
| Hydrophilicity | 1.060 |
| Buriedness | 0.637 |
| Don/acc character | 1.359 |
| SiteScore | 0.723 |
| D Score | 0.674 |
| Compound | NEG |
| Residue | . / 3219 |
| Chain | SL / AA |
| Non-redundant | False |
| Interacting RNA chains | A/AA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Compound | NEG |
| Residue | . / 3220 |
| Chain | TL / AA |
| Non-redundant | False |
| Interacting RNA chains | Z/BA |
| Volume | 446.59 Å3 |
| Hydrophobicity | 0.125 |
| Hydrophilicity | 1.488 |
| Buriedness | 0.732 |
| Don/acc character | 1.147 |
| SiteScore | 1.023 |
| D Score | 0.894 |
| Compound | NEG |
| Residue | . / 3221 |
| Chain | UL / AA |
| Non-redundant | True |
| Interacting RNA chains | Z/BA |
| Volume | 471.97 Å3 |
| Hydrophobicity | 0.206 |
| Hydrophilicity | 1.211 |
| Buriedness | 0.697 |
| Don/acc character | 1.063 |
| SiteScore | 0.938 |
| D Score | 0.885 |
| Compound | NEG |
| Residue | . / 3004 |
| Chain | QM / AW |
| Non-redundant | True |
| Interacting RNA chains | Z/BA |
| Volume | 1139.79 Å3 |
| Hydrophobicity | 0.128 |
| Hydrophilicity | 1.295 |
| Buriedness | 0.732 |
| Don/acc character | 0.898 |
| SiteScore | 1.022 |
| D Score | 0.957 |
| Compound | NEG |
| Residue | . / 3013 |
| Chain | EN / AX |
| Non-redundant | True |
| Interacting RNA chains | Z/BA |
| Volume | 340.26 Å3 |
| Hydrophobicity | 0.175 |
| Hydrophilicity | 1.266 |
| Buriedness | 0.731 |
| Don/acc character | 1.500 |
| SiteScore | 0.977 |
| D Score | 0.908 |
| Compound | NEG |
| Residue | . / 3170 |
| Chain | PCB / CA |
| Non-redundant | True |
| Interacting RNA chains | EB/CA, AC/CW |
| Volume | 644.84 Å3 |
| Hydrophobicity | 0.156 |
| Hydrophilicity | 1.319 |
| Buriedness | 0.759 |
| Don/acc character | 0.941 |
| SiteScore | 1.040 |
| D Score | 0.965 |
| Compound | NEG |
| Residue | . / 3172 |
| Chain | RCB / CA |
| Non-redundant | True |
| Interacting RNA chains | EB/CA |
| Volume | 103.59 Å3 |
| Hydrophobicity | 0.024 |
| Hydrophilicity | 1.130 |
| Buriedness | 0.630 |
| Don/acc character | 1.543 |
| SiteScore | 0.668 |
| D Score | 0.582 |
| Compound | NEG |
| Residue | . / 3173 |
| Chain | SCB / CA |
| Non-redundant | True |
| Interacting RNA chains | EB/CA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Compound | NEG |
| Residue | . / 3174 |
| Chain | TCB / CA |
| Non-redundant | True |
| Interacting RNA chains | DC/DA |
| Volume | 468.88 Å3 |
| Hydrophobicity | 0.165 |
| Hydrophilicity | 1.364 |
| Buriedness | 0.714 |
| Don/acc character | 1.199 |
| SiteScore | 1.011 |
| D Score | 0.924 |
| Compound | NEG |
| Residue | . / 3175 |
| Chain | UCB / CA |
| Non-redundant | True |
| Interacting RNA chains | DC/DA |
| Volume | 417.09 Å3 |
| Hydrophobicity | 0.194 |
| Hydrophilicity | 1.197 |
| Buriedness | 0.695 |
| Don/acc character | 0.699 |
| SiteScore | 0.887 |
| D Score | 0.824 |
| Compound | NEG |
| Residue | . / 3002 |
| Chain | LDB / CW |
| Non-redundant | False |
| Interacting RNA chains | DC/DA |
| Volume | 1031.06 Å3 |
| Hydrophobicity | 0.165 |
| Hydrophilicity | 1.252 |
| Buriedness | 0.727 |
| Don/acc character | 0.779 |
| SiteScore | 1.019 |
| D Score | 0.968 |
| Compound | NEG |
| Residue | . / 3004 |
| Chain | QDB / CX |
| Non-redundant | True |
| Interacting RNA chains | DC/DA |
| Volume | 354.32 Å3 |
| Hydrophobicity | 0.118 |
| Hydrophilicity | 1.280 |
| Buriedness | 0.718 |
| Don/acc character | 1.437 |
| SiteScore | 1.013 |
| D Score | 0.953 |