Complex 4w2i
System information
Experimental technique | X-ray |
Experimental resolution | 2.70 |
System mass | 4555.29 kDa |
Deposition year | 2014 |
Molecule type | RNA/Protein |
# RNA entities | 6 |
Organism | Thermus |
RCSB PDB Entry | 4w2i |
Reference | Polikanov Yury S., Szal Teresa, Jiang Fuyan, Gupta Pulkit, Matsuda Ryoichi, Shiozuka Masataka, Steitz Thomas A., Vázquez-Laslop Nora, Mankin Alexander S.. . Negamycin Interferes with Decoding and Translocation by Simultaneous Interaction with rRNA and tRNA Molecular Cell |
Compound | NEG |
Residue | . / 3216 |
Chain | PL / AA |
Non-redundant | False |
Interacting RNA chains | W/AW, A/AA |
Volume | 671.59 Å3 |
Hydrophobicity | 0.023 |
Hydrophilicity | 1.357 |
Buriedness | 0.761 |
Don/acc character | 2.708 |
SiteScore | 1.042 |
D Score | 0.955 |
Compound | NEG |
Residue | . / 3218 |
Chain | RL / AA |
Non-redundant | True |
Interacting RNA chains | A/AA |
Volume | 188.65 Å3 |
Hydrophobicity | 0.039 |
Hydrophilicity | 1.104 |
Buriedness | 0.635 |
Don/acc character | 3.695 |
SiteScore | 0.722 |
D Score | 0.659 |
Compound | NEG |
Residue | . / 3219 |
Chain | SL / AA |
Non-redundant | True |
Interacting RNA chains | A/AA |
Volume | - |
Hydrophobicity | - |
Hydrophilicity | - |
Buriedness | - |
Don/acc character | - |
SiteScore | - |
D Score | - |
Compound | NEG |
Residue | . / 3220 |
Chain | TL / AA |
Non-redundant | False |
Interacting RNA chains | Z/BA |
Volume | 466.82 Å3 |
Hydrophobicity | 0.019 |
Hydrophilicity | 1.352 |
Buriedness | 0.703 |
Don/acc character | 1.924 |
SiteScore | 1.003 |
D Score | 0.921 |
Compound | NEG |
Residue | . / 3221 |
Chain | UL / AA |
Non-redundant | True |
Interacting RNA chains | Z/BA |
Volume | 499.75 Å3 |
Hydrophobicity | 0.030 |
Hydrophilicity | 1.365 |
Buriedness | 0.687 |
Don/acc character | 1.254 |
SiteScore | 0.955 |
D Score | 0.859 |
Compound | NEG |
Residue | . / 3004 |
Chain | QM / AW |
Non-redundant | True |
Interacting RNA chains | Z/BA |
Volume | 1302.03 Å3 |
Hydrophobicity | 0.095 |
Hydrophilicity | 1.250 |
Buriedness | 0.728 |
Don/acc character | 1.720 |
SiteScore | 1.020 |
D Score | 0.969 |
Compound | NEG |
Residue | . / 3013 |
Chain | EN / AX |
Non-redundant | True |
Interacting RNA chains | Z/BA |
Volume | 357.41 Å3 |
Hydrophobicity | 0.000 |
Hydrophilicity | 1.281 |
Buriedness | 0.710 |
Don/acc character | 2.284 |
SiteScore | 0.970 |
D Score | 0.900 |
Compound | NEG |
Residue | . / 3170 |
Chain | PCB / CA |
Non-redundant | True |
Interacting RNA chains | AC/CW, EB/CA |
Volume | 689.09 Å3 |
Hydrophobicity | 0.043 |
Hydrophilicity | 1.349 |
Buriedness | 0.745 |
Don/acc character | 2.333 |
SiteScore | 1.031 |
D Score | 0.947 |
Compound | NEG |
Residue | . / 3172 |
Chain | RCB / CA |
Non-redundant | False |
Interacting RNA chains | EB/CA |
Volume | 109.76 Å3 |
Hydrophobicity | 0.037 |
Hydrophilicity | 1.174 |
Buriedness | 0.630 |
Don/acc character | 4.777 |
SiteScore | 0.636 |
D Score | 0.527 |
Compound | NEG |
Residue | . / 3173 |
Chain | SCB / CA |
Non-redundant | False |
Interacting RNA chains | EB/CA |
Volume | - |
Hydrophobicity | - |
Hydrophilicity | - |
Buriedness | - |
Don/acc character | - |
SiteScore | - |
D Score | - |
Compound | NEG |
Residue | . / 3174 |
Chain | TCB / CA |
Non-redundant | True |
Interacting RNA chains | DC/DA |
Volume | 493.92 Å3 |
Hydrophobicity | 0.034 |
Hydrophilicity | 1.325 |
Buriedness | 0.689 |
Don/acc character | 1.839 |
SiteScore | 0.994 |
D Score | 0.921 |
Compound | NEG |
Residue | . / 3175 |
Chain | UCB / CA |
Non-redundant | True |
Interacting RNA chains | DC/DA |
Volume | 437.67 Å3 |
Hydrophobicity | 0.015 |
Hydrophilicity | 1.371 |
Buriedness | 0.687 |
Don/acc character | 0.977 |
SiteScore | 0.923 |
D Score | 0.816 |
Compound | NEG |
Residue | . / 3002 |
Chain | LDB / CW |
Non-redundant | False |
Interacting RNA chains | DC/DA |
Volume | 1079.42 Å3 |
Hydrophobicity | 0.084 |
Hydrophilicity | 1.271 |
Buriedness | 0.725 |
Don/acc character | 1.555 |
SiteScore | 1.018 |
D Score | 0.961 |
Compound | NEG |
Residue | . / 3004 |
Chain | QDB / CX |
Non-redundant | True |
Interacting RNA chains | DC/DA |
Volume | 373.18 Å3 |
Hydrophobicity | 0.006 |
Hydrophilicity | 1.331 |
Buriedness | 0.704 |
Don/acc character | 2.040 |
SiteScore | 1.004 |
D Score | 0.929 |