Complex 4q9r
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.12 |
| System mass | 74.68 kDa |
| Deposition year | 2014 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 4q9r |
| Reference | Huang Hao, Suslov Nikolai B, Li Nan-Sheng, Shelke Sandip A, Evans Molly E, Koldobskaya Yelena, Rice Phoebe A, Piccirilli Joseph A. 2014. A G-quadruplex–containing RNA activates fluorescence in a GFP-like fluorophore Nature Chemical Biology |
| Equivalence Class |
NR_all_27557.4
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | 2ZY |
| Residue | . / 102 |
| Chain | E / R |
| Non-redundant | True |
| Interacting RNA chains | C/R |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | C/R: aptamer_rna |
| RNA family global | aptamer_rna |
| Volume | 451.73 Å3 |
| Hydrophobicity | 0.508 |
| Hydrophilicity | 0.848 |
| Buriedness | 0.628 |
| Don/acc character | 2.137 |
| SiteScore | 1.140 |
| D Score | 1.040 |
| Kd | — |