HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4v5d

System information

Experimental technique X-ray
Experimental resolution 3.50
System mass 4516.21 kDa
Deposition year 2009
Molecule type RNA/Protein
# RNA entities 6
Organism Thermus
RCSB PDB Entry 4v5d
Reference Voorhees Rebecca M, Weixlbaumer Albert, Loakes David, Kelley Ann C, Ramakrishnan V. . Insights into substrate stabilization from snapshots of the peptidyl transferase center of the intact 70S ribosome Nature Structural & Molecular Biology

Compound PAR
Residue . / 1799
Chain AL / AA
Non-redundant False
Interacting RNA chains A/AA
Volume 210.26 Å3
Hydrophobicity 0.219
Hydrophilicity 0.951
Buriedness 0.677
Don/acc character 0.943
SiteScore 0.794
D Score 0.767

Compound PAR
Residue . / 1800
Chain CLA / CA
Non-redundant False
Interacting RNA chains FB/CA
Volume 297.04 Å3
Hydrophobicity 0.131
Hydrophilicity 1.034
Buriedness 0.658
Don/acc character 1.175
SiteScore 0.906
D Score 0.909