HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4v5d

System information

Experimental technique X-ray
Experimental resolution 3.50
System mass 4516.21 kDa
Deposition year 2009
Molecule type RNA/Protein
# RNA entities 6
Organism Thermus
RCSB PDB Entry 4v5d
Reference Voorhees Rebecca M, Weixlbaumer Albert, Loakes David, Kelley Ann C, Ramakrishnan V. . Insights into substrate stabilization from snapshots of the peptidyl transferase center of the intact 70S ribosome Nature Structural & Molecular Biology

Compound PAR
Residue . / 1799
Chain AL / AA
Non-redundant False
Interacting RNA chains A/AA
Volume 217.46 Å3
Hydrophobicity 0.000
Hydrophilicity 1.226
Buriedness 0.635
Don/acc character 2.440
SiteScore 0.652
D Score 0.530

Compound PAR
Residue . / 1800
Chain CLA / CA
Non-redundant False
Interacting RNA chains FB/CA
Volume 311.79 Å3
Hydrophobicity 0.062
Hydrophilicity 1.071
Buriedness 0.654
Don/acc character 3.340
SiteScore 0.963
D Score 0.974