HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 4v5d

System information

Experimental technique X-ray
Experimental resolution 3.50
System mass 4516.21 kDa
Deposition year 2009
Molecule type RNA/Protein
# RNA entities 1
Organism Thermus
RCSB PDB Entry 4v5d
Reference Voorhees Rebecca M, Weixlbaumer Albert, Loakes David, Kelley Ann C, Ramakrishnan V. . Insights into substrate stabilization from snapshots of the peptidyl transferase center of the intact 70S ribosome Nature Structural & Molecular Biology

Compound PAR
Residue . / 1799
Chain AL / AA
Non-redundant False
Interacting RNA chains A/AA
Volume 243.19 Å3
Hydrophobicity 0.103
Hydrophilicity 1.053
Buriedness 0.640
Don/acc character 1.540
SiteScore 0.992
D Score 0.827

Compound PAR
Residue . / 1800
Chain CLA / CA
Non-redundant True
Interacting RNA chains FB/CA
Volume 523.76 Å3
Hydrophobicity 0.072
Hydrophilicity 1.459
Buriedness 0.661
Don/acc character 1.275
SiteScore 1.125
D Score 0.861