HARIBOSS - RNA-SM complexes list

7m8d

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Human DNA Pol eta S113A with rA-ended primer and dATP: in crystallo reaction for 300 s

SM: DTP

7mjv

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MiaB in the complex with s-adenosylmethionine and RNA

SM: SAM

7mjw

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Methylated MiaB in the complex with 5'-deoxyadenosine, methionine and RNA

SM: 5AD 5AD ZKP ZKP

7mjx

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MiaB in the complex with 5'-deoxyadenosine, methionine and RNA

SM: 5AD 5AD

7n2c

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Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)

SM: ATP ATP FUA

7oax

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Crystal structure of the Chili RNA aptamer in complex with DMHBO+

SM: SPM SPM SPM SPM V5Z V5Z V5Z V5Z

7og4

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Human mitochondrial ribosome in complex with P/E-tRNA

SM: DOL

7pd3

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Structure of the human mitoribosomal large subunit in complex with NSUN4.MTERF4.GTPBP7 and MALSU1.L0R8F8.mt-ACP

SM: GCP

7q08

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Structure of Candida albicans 80S ribosome in complex with cycloheximide

SM: 3HE

7r81

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Structure of the translating Neurospora crassa ribosome arrested by cycloheximide

SM: 3HE

7rex

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PreQ1-1 (type-1) riboswitch in complex with tandem stacked metabolites

SM: PRF PRF PRF PRF PRF PRF

7ryf

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A. baumannii Ribosome-TP-6076 complex: P-site tRNA 70S

SM: 80P 80P 80P

7ryg

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A. baumannii Ribosome-TP-6076 complex: E-site tRNA 70S

SM: 80P 80P 80P

7ryh

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A. baumannii Ribosome-TP-6076 complex: Empty 70S

SM: 80P 80P 80P

7wi9

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The THF-II riboswitch bound to THF and soaking with SeUrea

SM: THG

7y7q

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QDE-1 in complex with RNA template, RNA primer and 3'-dGTP

SM: GTP GTP GTP

8bn3

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Yeast 80S, ES7s delta, eIF5A, Stm1 containing

SM: 3HE

8cgv

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Tiamulin bound to the 50S subunit

SM: MUL P8F P8F

8e32

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E. coli 50S ribosome bound to compound streptogramin analogs SA1 and SB1

SM: UCX UDF

8e3o

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E. coli 50S ribosome bound to solithromycin and VM1

SM: EM1 VIR

8e42

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E. coli 50S ribosome bound to tiamulin and azithromycin

SM: MUL ZIT

8e8e

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Human DNA polymerase eta-DNA-rU-ended primer ternary mismatch complex:reaction with 10 mM Mn2+ for 90s

SM: DGT

8e8f

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Human DNA polymerase eta-DNA-rU-ended primer ternary mismatch complex:reaction with 10 mM Mn2+ for 120s

SM: DGT

8e8g

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Human DNA polymerase eta-DNA-rU-ended primer ternary mismatch complex:reaction with 10 mM Mn2+ for 180s

SM: DGT

8e8h

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Human DNA polymerase eta-DNA-rU-ended primer ternary mismatch complex:reaction with 10 mM Mn2+ for 300s

SM: DGT

8fb3

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PreQ1-1 (type-1) riboswitch with stacked metabolites and a C10-G34 base pair in the expression platform

SM: PRF PRF PRF PRF PRF PRF

8fc1

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Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.50A resolution

SM: ARG ARG ERY ERY HGR HGR

8fc2

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Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.50A resolution

SM: ARG ARG HGR HGR ZIT ZIT

8fc3

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Crystal structure of the Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.60A resolution

SM: ARG ARG HGR HGR TEL TEL

8fc4

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Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and erythromycin at 2.45A resolution

SM: ARG ARG ERY HGR HGR

8fc5

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Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and azithromycin at 2.65A resolution

SM: ARG ARG HGR HGR ZIT ZIT

8fc6

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Crystal structure of the A2058-N6-dimethylated Thermus thermophilus 70S ribosome in complex with protein Y, hygromycin A, and telithromycin at 2.35A resolution

SM: ARG ARG HGR HGR TEL TEL

8g5y

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mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)

SM: 3H3 ANM

8g5z

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mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

SM: 3H3 ANM GSP

8g60

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mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

SM: 3H3 ANM

8g61

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mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

SM: 3H3 ANM

8g6j

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mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

SM: 3HE GSP HMT

8glp

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mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)

SM: 3H3 ANM

8gs2

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Structure of the Cas7-11-Csx29-guide RNA-target RNA (non-matching PFS) complex

SM: C5P

8ifd

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Dibekacin-added human 80S ribosome

SM: 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D

8ife

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Arbekacin-added human 80S ribosome

SM: 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G

8jy0

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Crystal structure of RhoBAST complexed with TMR-DN

SM: V8C V8C V8C

8k2c

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Cryo-EM structure of the human 80S ribosome with Tigecycline

SM: T1C T1C T1C T1C T1C T1C T1C T1C T1C

8k2d

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Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A

SM: GDP T1C T1C T1C T1C T1C T1C

8k82

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Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA

SM: T1C T1C T1C T1C T1C T1C

8k85

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Crystal structure of Red Broccoli aptamer with OBI

SM: A1EBI A1EBI

8oi5

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Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)

SM: 3K5 PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR

8p2f

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Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state

SM: WUX

8p2g

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Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state

SM: WUX

8p2h

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Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state

SM: FUA

8p4v

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80S yeast ribosome in complex with HaterumaimideQ

SM: X1K X1K

8p85

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80S yeast ribosome in complex with Fluorolissoclimide

SM: VDU VDU

8p9a

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80S yeast ribosome in complex with Methyllissoclimide

SM: XBI XBI

8pnn

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80S yeast ribosome in complex with Bromolissoclimide

SM: ZWB ZWB

8qyx

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Human 60S ribosomal subunit

SM: ATP SPM SPM SPM SPM SPM

8s8w

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SARS-CoV-2 nsp10-16 methyltransferase in complex with Sangivamycin and m7GpppA-RNA (Cap0-RNA)

SM: SAM SGV

8sx6

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RNA duplex bound with GMP and AMP monomers

SM: 5GP 5GP AMP

8sxl

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RNA UU template binding to AMP monomer

SM: AMP AMP AMP

8t2x

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Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, A-site tRNA, messenger RNA and eIF5A, PRE

SM: 3HE

8t2y

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Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE

SM: 3HE