HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8ifd

System information

Experimental technique Electron Microscopy
Experimental resolution 2.59
System mass 3825.79 kDa
Deposition year 2023
Molecule type RNA/Protein
# RNA entities 3
Organism Homo
RCSB PDB Entry 8ifd
Reference Tomono Junta, Asano Kosuke, Chiashi Takuma, Suzuki Masato, Igarashi Masayuki, Takahashi Yoshiaki, Tanaka Yoshikazu, Yokoyama Takeshi. . Direct visualization of ribosomes in the cell-free system revealed the functional evolution of aminoglycoside The Journal of Biochemistry

Compound 84D
Residue . / 5101
Chain CC / 1A
Non-redundant True
Interacting RNA chains A/1A
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound 84D
Residue . / 5107
Chain IC / 1A
Non-redundant True
Interacting RNA chains A/1A
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound 84D
Residue . / 5110
Chain LC / 1A
Non-redundant True
Interacting RNA chains A/1A
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound 84D
Residue . / 5111
Chain MC / 1A
Non-redundant True
Interacting RNA chains A/1A
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound 84D
Residue . / 1901
Chain CO / 2m
Non-redundant True
Interacting RNA chains UA/2m
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -