Complex 8ifd
System information
Experimental technique | Electron Microscopy |
Experimental resolution | 2.59 |
System mass | 3825.79 kDa |
Deposition year | 2023 |
Molecule type | RNA/Protein |
# RNA entities | 3 |
Organism | Homo |
RCSB PDB Entry | 8ifd |
Reference | Tomono Junta, Asano Kosuke, Chiashi Takuma, Suzuki Masato, Igarashi Masayuki, Takahashi Yoshiaki, Tanaka Yoshikazu, Yokoyama Takeshi. . Direct visualization of ribosomes in the cell-free system revealed the functional evolution of aminoglycoside The Journal of Biochemistry |
Compound | 84D |
Residue | . / 5101 |
Chain | CC / 1A |
Non-redundant | True |
Interacting RNA chains | A/1A |
Volume | 235.98 Å3 |
Hydrophobicity | 0.175 |
Hydrophilicity | 0.992 |
Buriedness | 0.655 |
Don/acc character | 1.982 |
SiteScore | 0.834 |
D Score | 0.822 |
Compound | 84D |
Residue | . / 5107 |
Chain | IC / 1A |
Non-redundant | True |
Interacting RNA chains | A/1A |
Volume | - |
Hydrophobicity | - |
Hydrophilicity | - |
Buriedness | - |
Don/acc character | - |
SiteScore | - |
D Score | - |
Compound | 84D |
Residue | . / 5110 |
Chain | LC / 1A |
Non-redundant | True |
Interacting RNA chains | A/1A |
Volume | 1577.46 Å3 |
Hydrophobicity | 0.066 |
Hydrophilicity | 1.322 |
Buriedness | 0.764 |
Don/acc character | 3.168 |
SiteScore | 1.044 |
D Score | 0.968 |
Compound | 84D |
Residue | . / 5111 |
Chain | MC / 1A |
Non-redundant | True |
Interacting RNA chains | A/1A |
Volume | 822.51 Å3 |
Hydrophobicity | 0.062 |
Hydrophilicity | 1.443 |
Buriedness | 0.759 |
Don/acc character | 1.994 |
SiteScore | 1.041 |
D Score | 0.925 |
Compound | 84D |
Residue | . / 1901 |
Chain | CO / 2m |
Non-redundant | True |
Interacting RNA chains | UA/2m |
Volume | 135.48 Å3 |
Hydrophobicity | 0.086 |
Hydrophilicity | 0.945 |
Buriedness | 0.644 |
Don/acc character | 2.139 |
SiteScore | 0.533 |
D Score | 0.442 |