Complex 8ifd
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.59 |
| System mass | 3825.79 kDa |
| Deposition year | 2023 |
| Molecule type | RNA/Protein |
| # RNA entities | 3 |
| Organism | Homo |
| RCSB PDB Entry | 8ifd |
| Reference | Tomono Junta, Asano Kosuke, Chiashi Takuma, Suzuki Masato, Igarashi Masayuki, Takahashi Yoshiaki, Tanaka Yoshikazu, Yokoyama Takeshi. . Direct visualization of ribosomes in the cell-free system revealed the functional evolution of aminoglycoside The Journal of Biochemistry |
| Compound | 84D |
| Residue | . / 5101 |
| Chain | CC / 1A |
| Non-redundant | True |
| Interacting RNA chains | A/1A |
| Volume | 235.98 Å3 |
| Hydrophobicity | 0.175 |
| Hydrophilicity | 0.992 |
| Buriedness | 0.655 |
| Don/acc character | 1.982 |
| SiteScore | 0.834 |
| D Score | 0.822 |
| Compound | 84D |
| Residue | . / 5107 |
| Chain | IC / 1A |
| Non-redundant | True |
| Interacting RNA chains | A/1A |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Compound | 84D |
| Residue | . / 5110 |
| Chain | LC / 1A |
| Non-redundant | True |
| Interacting RNA chains | A/1A |
| Volume | 1577.46 Å3 |
| Hydrophobicity | 0.066 |
| Hydrophilicity | 1.322 |
| Buriedness | 0.764 |
| Don/acc character | 3.168 |
| SiteScore | 1.044 |
| D Score | 0.968 |
| Compound | 84D |
| Residue | . / 5111 |
| Chain | MC / 1A |
| Non-redundant | True |
| Interacting RNA chains | A/1A |
| Volume | 822.51 Å3 |
| Hydrophobicity | 0.062 |
| Hydrophilicity | 1.443 |
| Buriedness | 0.759 |
| Don/acc character | 1.994 |
| SiteScore | 1.041 |
| D Score | 0.925 |
| Compound | 84D |
| Residue | . / 1901 |
| Chain | CO / 2m |
| Non-redundant | True |
| Interacting RNA chains | UA/2m |
| Volume | 135.48 Å3 |
| Hydrophobicity | 0.086 |
| Hydrophilicity | 0.945 |
| Buriedness | 0.644 |
| Don/acc character | 2.139 |
| SiteScore | 0.533 |
| D Score | 0.442 |