Complex 8s8w
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.10 |
| System mass | 51.91 kDa |
| Deposition year | 2024 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 8s8w |
| Reference | Kremling Viviane, Falke Sven, Fernández-García Yaiza, Ehrt Christiane, Kiene Antonia, Klopprogge Bjarne, Scheer Emilie, Barthels Fabian, Middendorf Philipp, Kühn Sebastian, Günther Stephan, Rarey Matthias, Chapman Henry N, Oberthür Dominik, Sprenger Janina. 2024. SARS-CoV-2 methyltransferase nsp10-16 in complex with natural and drug-like purine analogs for guiding structure-based drug discovery preprint (eLife) |
| Equivalence Class |
NR_all_16041.4
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | SAM |
| Residue | . / 7202 |
| Chain | E / A |
| Non-redundant | False |
| Interacting RNA chains | C/C |
| RNA environment detailled | protein, other |
| RNA environment global | RNA/Other |
| RNA family chains | C/C: synthetic construct |
| RNA family global | synthetic construct |
| Volume | 68.60 Å3 |
| Hydrophobicity | 0.278 |
| Hydrophilicity | 0.783 |
| Buriedness | 0.533 |
| Don/acc character | 0.586 |
| SiteScore | 0.542 |
| D Score | 0.495 |
| Kd | — |
| Compound | SGV |
| Residue | . / 7203 |
| Chain | F / A |
| Non-redundant | False |
| Interacting RNA chains | C/C |
| RNA environment detailled | protein, other |
| RNA environment global | RNA/Other |
| RNA family chains | C/C: synthetic construct |
| RNA family global | synthetic construct |
| Volume | 65.17 Å3 |
| Hydrophobicity | 0.873 |
| Hydrophilicity | 0.895 |
| Buriedness | 0.632 |
| Don/acc character | 0.133 |
| SiteScore | 0.625 |
| D Score | 0.567 |
| Kd | — |