Complex 8p85
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.90 |
| System mass | 6601.12 kDa |
| Deposition year | 2023 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Saccharomyces |
| RCSB PDB Entry | 8p85 |
| Equivalence Class |
NR_all_90506.85
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | VDU |
| Residue | . / 4195 |
| Chain | BVA / 1 |
| Non-redundant | True |
| Interacting RNA chains | MA/1 |
| RNA environment detailled | protein, ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | MA/1: rRNA |
| RNA family global | rRNA |
| Volume | 359.12 Å3 |
| Hydrophobicity | 0.695 |
| Hydrophilicity | 0.851 |
| Buriedness | 0.708 |
| Don/acc character | 1.126 |
| SiteScore | 1.043 |
| D Score | 1.087 |
| Kd | — |
| Compound | VDU |
| Residue | . / 4255 |
| Chain | TGC / AR |
| Non-redundant | True |
| Interacting RNA chains | ZB/AR |
| RNA environment detailled | protein, ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | ZB/AR: rRNA |
| RNA family global | rRNA |
| Volume | 355.01 Å3 |
| Hydrophobicity | 0.670 |
| Hydrophilicity | 0.873 |
| Buriedness | 0.689 |
| Don/acc character | 0.870 |
| SiteScore | 1.026 |
| D Score | 1.068 |
| Kd | — |