HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8g6j

System information

Experimental technique Electron Microscopy
Experimental resolution 2.80
System mass 4006.57 kDa
Deposition year 2023
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 8g6j
Reference Holm Mikael, Natchiar S. Kundhavai, Rundlet Emily J., Myasnikov Alexander G., Watson Zoe L., Altman Roger B., Wang Hao-Yuan, Taunton Jack, Blanchard Scott C.. . mRNA decoding in human is kinetically and structurally distinct from bacteria Nature

Compound 3HE
Residue . / 5117
Chain NG / L5
Non-redundant True
Interacting RNA chains C/L5
Volume 292.92 Å3
Hydrophobicity 0.442
Hydrophilicity 0.965
Buriedness 0.659
Don/acc character 1.083
SiteScore 0.947
D Score 0.968

Compound GSP
Residue . / 501
Chain RR / EF
Non-redundant True
Interacting RNA chains C/L5
Volume 424.98 Å3
Hydrophobicity 0.118
Hydrophilicity 1.706
Buriedness 0.865
Don/acc character 0.662
SiteScore 1.111
D Score 0.903

Compound HMT
Residue . / 5118
Chain OG / L5
Non-redundant True
Interacting RNA chains C/L5, GC/Pt
Volume 620.14 Å3
Hydrophobicity 0.561
Hydrophilicity 1.165
Buriedness 0.797
Don/acc character 1.124
SiteScore 1.066
D Score 1.039