HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8ife

System information

Experimental technique Electron Microscopy
Experimental resolution 2.57
System mass 3828.11 kDa
Deposition year 2023
Molecule type RNA/Protein
# RNA entities 3
Organism Homo
RCSB PDB Entry 8ife
Reference Tomono Junta, Asano Kosuke, Chiashi Takuma, Suzuki Masato, Igarashi Masayuki, Takahashi Yoshiaki, Tanaka Yoshikazu, Yokoyama Takeshi. . Direct visualization of ribosomes in the cell-free system revealed the functional evolution of aminoglycoside The Journal of Biochemistry

Compound 84G
Residue . / 5101
Chain CC / 1A
Non-redundant True
Interacting RNA chains A/1A
Volume 727.50 Å3
Hydrophobicity 0.146
Hydrophilicity 1.274
Buriedness 0.704
Don/acc character 1.615
SiteScore 1.004
D Score 0.947

Compound 84G
Residue . / 5102
Chain DC / 1A
Non-redundant True
Interacting RNA chains A/1A
Volume 535.08 Å3
Hydrophobicity 0.044
Hydrophilicity 1.207
Buriedness 0.675
Don/acc character 1.350
SiteScore 0.928
D Score 0.879

Compound 84G
Residue . / 5110
Chain LC / 1A
Non-redundant True
Interacting RNA chains A/1A
Volume 777.58 Å3
Hydrophobicity 0.082
Hydrophilicity 1.267
Buriedness 0.700
Don/acc character 1.896
SiteScore 1.001
D Score 0.947

Compound 84G
Residue . / 5116
Chain RC / 1A
Non-redundant True
Interacting RNA chains A/1A
Volume 1558.59 Å3
Hydrophobicity 0.083
Hydrophilicity 1.253
Buriedness 0.753
Don/acc character 3.314
SiteScore 1.037
D Score 0.983

Compound 84G
Residue . / 5117
Chain SC / 1A
Non-redundant True
Interacting RNA chains A/1A
Volume 200.65 Å3
Hydrophobicity 0.000
Hydrophilicity 1.518
Buriedness 0.681
Don/acc character 1.626
SiteScore 0.768
D Score 0.572