Complex 8fc6
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.35 |
| System mass | 4428.57 kDa |
| Deposition year | 2022 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Thermus |
| RCSB PDB Entry | 8fc6 |
| Reference | Chen Chih-Wei, Leimer Nadja, Syroegin Egor A., Dunand Clémence, Bulman Zackery P., Lewis Kim, Polikanov Yury S., Svetlov Maxim S.. . Structural insights into the mechanism of overcoming Erm-mediated resistance by macrolides acting together with hygromycin-A Nature Communications |
| Equivalence Class |
NR_all_97519.80,
NR_all_42622.80
BGSU version: 4.49 |
| Compound | ARG |
| Residue | . / 231 |
| Chain | ORA / 1B |
| Non-redundant | True |
| Interacting RNA chains | B/1B |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | B/1B: rRNA |
| RNA family global | rRNA |
| Volume | 192.77 Å3 |
| Hydrophobicity | 0.000 |
| Hydrophilicity | 1.991 |
| Buriedness | 0.596 |
| Don/acc character | 0.986 |
| SiteScore | 1.032 |
| D Score | 0.585 |
| Kd | — |
| Compound | ARG |
| Residue | . / 320 |
| Chain | GTA / 1F |
| Non-redundant | True |
| Interacting RNA chains | A/1A |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/1A: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | HGR |
| Residue | . / 4020 |
| Chain | HQA / 1A |
| Non-redundant | True |
| Interacting RNA chains | A/1A |
| RNA environment detailled | ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/1A: rRNA |
| RNA family global | rRNA |
| Volume | 428.41 Å3 |
| Hydrophobicity | 0.854 |
| Hydrophilicity | 1.094 |
| Buriedness | 0.779 |
| Don/acc character | 0.688 |
| SiteScore | 1.204 |
| D Score | 1.050 |
| Kd | — |
| Compound | HGR |
| Residue | . / 3743 |
| Chain | KLC / 2A |
| Non-redundant | True |
| Interacting RNA chains | BB/2A |
| RNA environment detailled | ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | BB/2A: rRNA |
| RNA family global | rRNA |
| Volume | 691.83 Å3 |
| Hydrophobicity | 0.341 |
| Hydrophilicity | 1.640 |
| Buriedness | 0.718 |
| Don/acc character | 0.566 |
| SiteScore | 1.163 |
| D Score | 0.836 |
| Kd | — |
| Compound | TEL |
| Residue | . / 4021 |
| Chain | IQA / 1A |
| Non-redundant | True |
| Interacting RNA chains | A/1A |
| RNA environment detailled | protein, ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/1A: rRNA |
| RNA family global | rRNA |
| Volume | 119.36 Å3 |
| Hydrophobicity | 0.163 |
| Hydrophilicity | 1.153 |
| Buriedness | 0.597 |
| Don/acc character | 0.429 |
| SiteScore | 0.702 |
| D Score | 0.626 |
| Kd | — |
| Compound | TEL |
| Residue | . / 3744 |
| Chain | LLC / 2A |
| Non-redundant | True |
| Interacting RNA chains | BB/2A |
| RNA environment detailled | protein, ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | BB/2A: rRNA |
| RNA family global | rRNA |
| Volume | 103.59 Å3 |
| Hydrophobicity | 0.024 |
| Hydrophilicity | 2.084 |
| Buriedness | 0.592 |
| Don/acc character | 0.127 |
| SiteScore | 0.801 |
| D Score | 0.451 |
| Kd | — |