Complex 8e42
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.29 |
| System mass | 1110.32 kDa |
| Deposition year | 2022 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Escherichia |
| RCSB PDB Entry | 8e42 |
| Equivalence Class |
NR_all_83717.187
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | MUL |
| Residue | . / 3001 |
| Chain | K / I |
| Non-redundant | True |
| Interacting RNA chains | A/I |
| RNA environment detailled | other |
| RNA environment global | RNA/Other |
| RNA family chains | A/I: rRNA |
| RNA family global | rRNA |
| Volume | 620.83 Å3 |
| Hydrophobicity | 0.728 |
| Hydrophilicity | 0.924 |
| Buriedness | 0.795 |
| Don/acc character | 1.725 |
| SiteScore | 1.237 |
| D Score | 1.116 |
| Kd | — |
| Compound | ZIT |
| Residue | . / 3002 |
| Chain | L / I |
| Non-redundant | True |
| Interacting RNA chains | A/I |
| RNA environment detailled | protein, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/I: rRNA |
| RNA family global | rRNA |
| Volume | 459.62 Å3 |
| Hydrophobicity | 0.166 |
| Hydrophilicity | 1.281 |
| Buriedness | 0.783 |
| Don/acc character | 1.492 |
| SiteScore | 1.011 |
| D Score | 0.934 |
| Kd | — |