Complex 8bn3
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.40 |
| System mass | 2979.33 kDa |
| Deposition year | 2022 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Saccharomyces |
| RCSB PDB Entry | 8bn3 |
| Reference | Rauscher Robert, Eggers Cristian, Dimitrova-Paternoga Lyudmila, Shankar Vaishnavi, Rosina Alessia, Cristodero Marina, Paternoga Helge, Wilson Daniel N, Leidel Sebastian A, Polacek Norbert. 2024. Evolving precision: rRNA expansion segment 7S modulates translation velocity and accuracy in eukaryal ribosomes Nucleic Acids Research |
| Equivalence Class |
NR_all_90506.85
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | 3HE |
| Residue | . / 3464 |
| Chain | TE / 1 |
| Non-redundant | True |
| Interacting RNA chains | M/1 |
| RNA environment detailled | protein, other |
| RNA environment global | RNA/Other |
| RNA family chains | M/1: rRNA |
| RNA family global | rRNA |
| Volume | 451.05 Å3 |
| Hydrophobicity | 0.321 |
| Hydrophilicity | 1.156 |
| Buriedness | 0.809 |
| Don/acc character | 1.043 |
| SiteScore | 1.075 |
| D Score | 1.049 |
| Kd | — |