HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8k2c

System information

Experimental technique Electron Microscopy
Experimental resolution 2.40
System mass 4008.39 kDa
Deposition year 2023
Molecule type RNA/Protein
# RNA entities 4
Organism Homo
RCSB PDB Entry 8k2c
Reference Li Xiang, Wang Mengjiao, Denk Timo, Buschauer Robert, Li Yi, Beckmann Roland, Cheng Jingdong. . Structural basis for differential inhibition of eukaryotic ribosomes by tigecycline Nature Communications

Compound T1C
Residue . / 5314
Chain NK / L5
Non-redundant False
Interacting RNA chains A/L5, C/L8
Volume 652.39 Å3
Hydrophobicity 0.153
Hydrophilicity 1.203
Buriedness 0.674
Don/acc character 1.569
SiteScore 0.984
D Score 0.952

Compound T1C
Residue . / 5315
Chain OK / L5
Non-redundant True
Interacting RNA chains A/L5
Volume 435.61 Å3
Hydrophobicity 0.211
Hydrophilicity 1.198
Buriedness 0.690
Don/acc character 2.085
SiteScore 0.995
D Score 0.963