HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8cgv

System information

Experimental technique Electron Microscopy
Experimental resolution 1.66
System mass 1332.80 kDa
Deposition year 2023
Molecule type RNA/Protein
# RNA entities 1
Organism Escherichia
RCSB PDB Entry 8cgv
Reference Paternoga Helge, Crowe-McAuliffe Caillan, Bock Lars V., Koller Timm O., Morici Martino, Beckert Bertrand, Myasnikov Alexander G., Grubmüller Helmut, Nováček Jiří, Wilson Daniel N.. . Structural conservation of antibiotic interaction with ribosomes Nature Structural & Molecular Biology

Compound MUL
Residue . / 3003
Chain GA / a
Non-redundant True
Interacting RNA chains E/a
Volume 463.39 Å3
Hydrophobicity 0.897
Hydrophilicity 0.812
Buriedness 0.774
Don/acc character 1.661
SiteScore 1.180
D Score 1.056

Compound P8F
Residue . / 3001
Chain EA / a
Non-redundant True
Interacting RNA chains E/a
Volume 626.66 Å3
Hydrophobicity 0.209
Hydrophilicity 1.239
Buriedness 0.713
Don/acc character 1.567
SiteScore 1.160
D Score 0.964

Compound P8F
Residue . / 3002
Chain FA / a
Non-redundant True
Interacting RNA chains E/a
Volume 170.13 Å3
Hydrophobicity 0.168
Hydrophilicity 1.574
Buriedness 0.695
Don/acc character 0.798
SiteScore 0.953
D Score 0.594