HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 7ryh

System information

Experimental technique Electron Microscopy
Experimental resolution 2.43
System mass 2137.00 kDa
Deposition year 2021
Molecule type RNA/Protein
# RNA entities 1
Organism Acinetobacter
RCSB PDB Entry 7ryh
Reference Morgan Christopher E., Zhang Zhemin, Bonomo Robert A., Yu Edward W.. . An Analysis of the Novel Fluorocycline TP-6076 Bound to Both the Ribosome and Multidrug Efflux Pump AdeJ from Acinetobacter baumannii mBio
Equivalence Class NR_all_43481.6
BGSU version: 4.48

Compound 80P
Residue . / 1601
Chain AB / a
Non-redundant True
Interacting RNA chains EA/a
RNA environment detailled ion
RNA environment global RNA
RNA family chains EA/a: rRNA
RNA family global rRNA
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -
Kd

Compound 80P
Residue . / 1602
Chain BB / a
Non-redundant True
Interacting RNA chains EA/a
RNA environment detailled ion, other
RNA environment global RNA/Other
RNA family chains EA/a: rRNA
RNA family global rRNA
Volume 172.19 Å3
Hydrophobicity 0.225
Hydrophilicity 1.142
Buriedness 0.710
Don/acc character 3.676
SiteScore 0.763
D Score 0.586
Kd

Compound 80P
Residue . / 1603
Chain CB / a
Non-redundant True
Interacting RNA chains EA/a
RNA environment detailled ion, other
RNA environment global RNA/Other
RNA family chains EA/a: rRNA
RNA family global rRNA
Volume 373.53 Å3
Hydrophobicity 0.260
Hydrophilicity 1.460
Buriedness 0.826
Don/acc character 1.309
SiteScore 1.146
D Score 0.845
Kd