Complex 8fc2
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.50 |
| System mass | 4428.47 kDa |
| Deposition year | 2022 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Thermus |
| RCSB PDB Entry | 8fc2 |
| Reference | Chen Chih-Wei, Leimer Nadja, Syroegin Egor A., Dunand Clémence, Bulman Zackery P., Lewis Kim, Polikanov Yury S., Svetlov Maxim S.. . Structural insights into the mechanism of overcoming Erm-mediated resistance by macrolides acting together with hygromycin-A Nature Communications |
| Equivalence Class |
NR_all_97519.80,
NR_all_42622.80
BGSU version: 4.49 |
| Compound | ARG |
| Residue | . / 230 |
| Chain | PRA / 1B |
| Non-redundant | True |
| Interacting RNA chains | B/1B |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | B/1B: rRNA |
| RNA family global | rRNA |
| Volume | 117.31 Å3 |
| Hydrophobicity | 0.000 |
| Hydrophilicity | 2.107 |
| Buriedness | 0.647 |
| Don/acc character | 1.128 |
| SiteScore | 0.885 |
| D Score | 0.346 |
| Kd | — |
| Compound | ARG |
| Residue | . / 318 |
| Chain | LTA / 1F |
| Non-redundant | True |
| Interacting RNA chains | A/1A |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/1A: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | HGR |
| Residue | . / 4022 |
| Chain | JQA / 1A |
| Non-redundant | True |
| Interacting RNA chains | A/1A |
| RNA environment detailled | ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/1A: rRNA |
| RNA family global | rRNA |
| Volume | 498.04 Å3 |
| Hydrophobicity | 1.023 |
| Hydrophilicity | 0.933 |
| Buriedness | 0.800 |
| Don/acc character | 0.747 |
| SiteScore | 1.239 |
| D Score | 1.116 |
| Kd | — |
| Compound | HGR |
| Residue | . / 3730 |
| Chain | BLC / 2A |
| Non-redundant | True |
| Interacting RNA chains | BB/2A |
| RNA environment detailled | ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | BB/2A: rRNA |
| RNA family global | rRNA |
| Volume | 728.53 Å3 |
| Hydrophobicity | 0.632 |
| Hydrophilicity | 1.321 |
| Buriedness | 0.750 |
| Don/acc character | 0.846 |
| SiteScore | 1.185 |
| D Score | 0.960 |
| Kd | — |
| Compound | ZIT |
| Residue | . / 4023 |
| Chain | KQA / 1A |
| Non-redundant | True |
| Interacting RNA chains | A/1A |
| RNA environment detailled | protein, ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/1A: rRNA |
| RNA family global | rRNA |
| Volume | 580.01 Å3 |
| Hydrophobicity | 0.141 |
| Hydrophilicity | 1.906 |
| Buriedness | 0.757 |
| Don/acc character | 0.544 |
| SiteScore | 1.190 |
| D Score | 0.773 |
| Kd | — |
| Compound | ZIT |
| Residue | . / 3731 |
| Chain | CLC / 2A |
| Non-redundant | True |
| Interacting RNA chains | BB/2A |
| RNA environment detailled | protein, ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | BB/2A: rRNA |
| RNA family global | rRNA |
| Volume | 492.89 Å3 |
| Hydrophobicity | 0.666 |
| Hydrophilicity | 1.185 |
| Buriedness | 0.743 |
| Don/acc character | 0.765 |
| SiteScore | 1.180 |
| D Score | 0.999 |
| Kd | — |