Complex 8fc1
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.50 |
| System mass | 4428.66 kDa |
| Deposition year | 2022 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Thermus |
| RCSB PDB Entry | 8fc1 |
| Reference | Chen Chih-Wei, Leimer Nadja, Syroegin Egor A., Dunand Clémence, Bulman Zackery P., Lewis Kim, Polikanov Yury S., Svetlov Maxim S.. . Structural insights into the mechanism of overcoming Erm-mediated resistance by macrolides acting together with hygromycin-A Nature Communications |
| Equivalence Class |
NR_all_97519.80,
NR_all_42622.80
BGSU version: 4.49 |
| Compound | ARG |
| Residue | . / 230 |
| Chain | ISA / 1B |
| Non-redundant | True |
| Interacting RNA chains | B/1B |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | B/1B: rRNA |
| RNA family global | rRNA |
| Volume | 190.37 Å3 |
| Hydrophobicity | 0.017 |
| Hydrophilicity | 2.117 |
| Buriedness | 0.620 |
| Don/acc character | 0.931 |
| SiteScore | 1.049 |
| D Score | 0.559 |
| Kd | — |
| Compound | ARG |
| Residue | . / 319 |
| Chain | BUA / 1F |
| Non-redundant | True |
| Interacting RNA chains | A/1A |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/1A: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | ERY |
| Residue | . / 4042 |
| Chain | DRA / 1A |
| Non-redundant | True |
| Interacting RNA chains | A/1A |
| RNA environment detailled | protein, ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/1A: rRNA |
| RNA family global | rRNA |
| Volume | 466.14 Å3 |
| Hydrophobicity | 0.202 |
| Hydrophilicity | 1.755 |
| Buriedness | 0.748 |
| Don/acc character | 0.399 |
| SiteScore | 1.183 |
| D Score | 0.817 |
| Kd | — |
| Compound | ERY |
| Residue | . / 3732 |
| Chain | RLC / 2A |
| Non-redundant | True |
| Interacting RNA chains | BB/2A |
| RNA environment detailled | protein, ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | BB/2A: rRNA |
| RNA family global | rRNA |
| Volume | 573.50 Å3 |
| Hydrophobicity | 0.646 |
| Hydrophilicity | 1.261 |
| Buriedness | 0.749 |
| Don/acc character | 0.890 |
| SiteScore | 1.184 |
| D Score | 0.978 |
| Kd | — |
| Compound | HGR |
| Residue | . / 4041 |
| Chain | CRA / 1A |
| Non-redundant | True |
| Interacting RNA chains | A/1A |
| RNA environment detailled | ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | A/1A: rRNA |
| RNA family global | rRNA |
| Volume | 792.67 Å3 |
| Hydrophobicity | 0.484 |
| Hydrophilicity | 1.650 |
| Buriedness | 0.744 |
| Don/acc character | 0.567 |
| SiteScore | 1.181 |
| D Score | 0.848 |
| Kd | — |
| Compound | HGR |
| Residue | . / 3731 |
| Chain | QLC / 2A |
| Non-redundant | True |
| Interacting RNA chains | BB/2A |
| RNA environment detailled | ion, other |
| RNA environment global | RNA/Other |
| RNA family chains | BB/2A: rRNA |
| RNA family global | rRNA |
| Volume | 590.99 Å3 |
| Hydrophobicity | 0.973 |
| Hydrophilicity | 0.989 |
| Buriedness | 0.801 |
| Don/acc character | 1.036 |
| SiteScore | 1.229 |
| D Score | 1.098 |
| Kd | — |