HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 7mjw

System information

Experimental technique X-ray
Experimental resolution 1.40
System mass 113.21 kDa
Deposition year 2021
Molecule type RNA/Protein
# RNA entities 1
Organism Bacteroides
RCSB PDB Entry 7mjw
Reference Esakova Olga A., Grove Tyler L., Yennawar Neela H., Arcinas Arthur J., Wang Bo, Krebs Carsten, Almo Steven C., Booker Squire J.. . Structural basis for tRNA methylthiolation by the radical SAM enzyme MiaB Nature

Compound 5AD
Residue . / 503
Chain G / A
Non-redundant True
Interacting RNA chains B/M
Volume 112.16 Å3
Hydrophobicity 0.850
Hydrophilicity 1.189
Buriedness 0.964
Don/acc character 0.545
SiteScore 1.096
D Score 1.026

Compound 5AD
Residue . / 503
Chain L / B
Non-redundant True
Interacting RNA chains D/G
Volume 114.22 Å3
Hydrophobicity 0.957
Hydrophilicity 1.278
Buriedness 0.968
Don/acc character 0.484
SiteScore 1.107
D Score 1.010

Compound ZKP
Residue . / 501
Chain E / A
Non-redundant True
Interacting RNA chains B/M
Volume 57.97 Å3
Hydrophobicity 2.068
Hydrophilicity 1.163
Buriedness 0.997
Don/acc character 0.057
SiteScore 0.919
D Score 0.798

Compound ZKP
Residue . / 501
Chain J / B
Non-redundant True
Interacting RNA chains D/G
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -