Complex 8sxl
System information
| Experimental technique | X-ray |
| Experimental resolution | 1.90 |
| System mass | 10.01 kDa |
| Deposition year | 2023 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 8sxl |
| Reference | Dantsu Yuliya, Zhang Ying, Zhang Wen. . Insight into the structures of unusual base pairs in RNA complexes containing a primer/template/adenosine ligand RSC Chemical Biology |
| Equivalence Class |
NR_all_56321.1
BGSU version: 4.49 |
| Compound | AMP |
| Residue | . / 101 |
| Chain | C / A |
| Non-redundant | True |
| Interacting RNA chains | A/A, B/B |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: synthetic construct, B/B: synthetic construct |
| RNA family global | synthetic construct |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | AMP |
| Residue | . / 101 |
| Chain | D / B |
| Non-redundant | True |
| Interacting RNA chains | A/A, B/B |
| RNA environment detailled | other |
| RNA environment global | RNA/Other |
| RNA family chains | A/A: synthetic construct, B/B: synthetic construct |
| RNA family global | synthetic construct |
| Volume | 50.76 Å3 |
| Hydrophobicity | 0.667 |
| Hydrophilicity | 0.857 |
| Buriedness | 0.561 |
| Don/acc character | 3.799 |
| SiteScore | 0.606 |
| D Score | 0.564 |
| Kd | — |
| Compound | AMP |
| Residue | . / 102 |
| Chain | E / B |
| Non-redundant | True |
| Interacting RNA chains | A/A, B/B |
| RNA environment detailled | other |
| RNA environment global | RNA/Other |
| RNA family chains | A/A: synthetic construct, B/B: synthetic construct |
| RNA family global | synthetic construct |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |