Complex 7oax
System information
Experimental technique | X-ray |
Experimental resolution | 2.24 |
System mass | 73.12 kDa |
Deposition year | 2021 |
Molecule type | RNA |
# RNA entities | 1 |
Organism | N/A |
RCSB PDB Entry | 7oax |
Reference | Mieczkowski Mateusz, Steinmetzger Christian, Bessi Irene, Lenz Ann-Kathrin, Schmiedel Alexander, Holzapfel Marco, Lambert Christoph, Pena Vladimir, Höbartner Claudia. . Large Stokes shift fluorescence activation in an RNA aptamer by intermolecular proton transfer to guanine Nature Communications |
Compound | SPM |
Residue | . / 102 |
Chain | N / B |
Non-redundant | True |
Interacting RNA chains | D/D, B/B |
Volume | 557.03 Å3 |
Hydrophobicity | 0.103 |
Hydrophilicity | 1.158 |
Buriedness | 0.663 |
Don/acc character | 2.488 |
SiteScore | 0.977 |
D Score | 0.960 |
Compound | SPM |
Residue | . / 102 |
Chain | CA / D |
Non-redundant | True |
Interacting RNA chains | D/D, B/B |
Volume | 545.71 Å3 |
Hydrophobicity | 0.118 |
Hydrophilicity | 1.168 |
Buriedness | 0.673 |
Don/acc character | 2.198 |
SiteScore | 0.983 |
D Score | 0.963 |
Compound | V5Z |
Residue | . / 102 |
Chain | F / A |
Non-redundant | False |
Interacting RNA chains | C/C, A/A |
Volume | 691.83 Å3 |
Hydrophobicity | 0.522 |
Hydrophilicity | 1.057 |
Buriedness | 0.697 |
Don/acc character | 1.491 |
SiteScore | 1.000 |
D Score | 1.014 |
Compound | V5Z |
Residue | . / 103 |
Chain | O / B |
Non-redundant | True |
Interacting RNA chains | D/D, B/B |
Volume | 746.02 Å3 |
Hydrophobicity | 0.622 |
Hydrophilicity | 1.076 |
Buriedness | 0.719 |
Don/acc character | 1.355 |
SiteScore | 1.014 |
D Score | 1.020 |
Compound | V5Z |
Residue | . / 103 |
Chain | W / C |
Non-redundant | True |
Interacting RNA chains | C/C, A/A |
Volume | 624.60 Å3 |
Hydrophobicity | 0.653 |
Hydrophilicity | 1.023 |
Buriedness | 0.705 |
Don/acc character | 1.689 |
SiteScore | 1.008 |
D Score | 1.030 |
Compound | V5Z |
Residue | . / 103 |
Chain | DA / D |
Non-redundant | False |
Interacting RNA chains | D/D, B/B |
Volume | 518.62 Å3 |
Hydrophobicity | 0.794 |
Hydrophilicity | 0.963 |
Buriedness | 0.712 |
Don/acc character | 1.418 |
SiteScore | 1.024 |
D Score | 1.053 |