Complex 7oax
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.24 |
| System mass | 73.12 kDa |
| Deposition year | 2021 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 7oax |
| Reference | Mieczkowski Mateusz, Steinmetzger Christian, Bessi Irene, Lenz Ann-Kathrin, Schmiedel Alexander, Holzapfel Marco, Lambert Christoph, Pena Vladimir, Höbartner Claudia. . Large Stokes shift fluorescence activation in an RNA aptamer by intermolecular proton transfer to guanine Nature Communications |
| Compound | SPM |
| Residue | . / 102 |
| Chain | N / B |
| Non-redundant | True |
| Interacting RNA chains | D/D, B/B |
| Volume | 557.03 Å3 |
| Hydrophobicity | 0.103 |
| Hydrophilicity | 1.158 |
| Buriedness | 0.663 |
| Don/acc character | 2.488 |
| SiteScore | 0.977 |
| D Score | 0.960 |
| Compound | SPM |
| Residue | . / 102 |
| Chain | CA / D |
| Non-redundant | True |
| Interacting RNA chains | D/D, B/B |
| Volume | 545.71 Å3 |
| Hydrophobicity | 0.118 |
| Hydrophilicity | 1.168 |
| Buriedness | 0.673 |
| Don/acc character | 2.198 |
| SiteScore | 0.983 |
| D Score | 0.963 |
| Compound | V5Z |
| Residue | . / 102 |
| Chain | F / A |
| Non-redundant | False |
| Interacting RNA chains | C/C, A/A |
| Volume | 691.83 Å3 |
| Hydrophobicity | 0.522 |
| Hydrophilicity | 1.057 |
| Buriedness | 0.697 |
| Don/acc character | 1.491 |
| SiteScore | 1.000 |
| D Score | 1.014 |
| Compound | V5Z |
| Residue | . / 103 |
| Chain | O / B |
| Non-redundant | True |
| Interacting RNA chains | D/D, B/B |
| Volume | 746.02 Å3 |
| Hydrophobicity | 0.622 |
| Hydrophilicity | 1.076 |
| Buriedness | 0.719 |
| Don/acc character | 1.355 |
| SiteScore | 1.014 |
| D Score | 1.020 |
| Compound | V5Z |
| Residue | . / 103 |
| Chain | W / C |
| Non-redundant | True |
| Interacting RNA chains | C/C, A/A |
| Volume | 624.60 Å3 |
| Hydrophobicity | 0.653 |
| Hydrophilicity | 1.023 |
| Buriedness | 0.705 |
| Don/acc character | 1.689 |
| SiteScore | 1.008 |
| D Score | 1.030 |
| Compound | V5Z |
| Residue | . / 103 |
| Chain | DA / D |
| Non-redundant | False |
| Interacting RNA chains | D/D, B/B |
| Volume | 518.62 Å3 |
| Hydrophobicity | 0.794 |
| Hydrophilicity | 0.963 |
| Buriedness | 0.712 |
| Don/acc character | 1.418 |
| SiteScore | 1.024 |
| D Score | 1.053 |