Complex 7oax
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.24 |
| System mass | 73.12 kDa |
| Deposition year | 2021 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 7oax |
| Reference | Mieczkowski Mateusz, Steinmetzger Christian, Bessi Irene, Lenz Ann-Kathrin, Schmiedel Alexander, Holzapfel Marco, Lambert Christoph, Pena Vladimir, Höbartner Claudia. . Large Stokes shift fluorescence activation in an RNA aptamer by intermolecular proton transfer to guanine Nature Communications |
| Compound | SPM |
| Residue | . / 102 |
| Chain | N / B |
| Non-redundant | True |
| Interacting RNA chains | D/D, B/B |
| Volume | 531.31 Å3 |
| Hydrophobicity | 0.160 |
| Hydrophilicity | 1.276 |
| Buriedness | 0.685 |
| Don/acc character | 0.992 |
| SiteScore | 0.991 |
| D Score | 0.935 |
| Compound | SPM |
| Residue | . / 102 |
| Chain | CA / D |
| Non-redundant | True |
| Interacting RNA chains | D/D, B/B |
| Volume | 522.05 Å3 |
| Hydrophobicity | 0.190 |
| Hydrophilicity | 1.231 |
| Buriedness | 0.679 |
| Don/acc character | 1.033 |
| SiteScore | 0.987 |
| D Score | 0.946 |
| Compound | V5Z |
| Residue | . / 102 |
| Chain | F / A |
| Non-redundant | True |
| Interacting RNA chains | A/A, C/C |
| Volume | 658.56 Å3 |
| Hydrophobicity | 0.466 |
| Hydrophilicity | 1.123 |
| Buriedness | 0.711 |
| Don/acc character | 0.718 |
| SiteScore | 1.008 |
| D Score | 1.000 |
| Compound | V5Z |
| Residue | . / 103 |
| Chain | O / B |
| Non-redundant | True |
| Interacting RNA chains | D/D, B/B |
| Volume | 723.73 Å3 |
| Hydrophobicity | 0.594 |
| Hydrophilicity | 1.209 |
| Buriedness | 0.733 |
| Don/acc character | 0.696 |
| SiteScore | 1.023 |
| D Score | 0.985 |
| Compound | V5Z |
| Residue | . / 103 |
| Chain | W / C |
| Non-redundant | False |
| Interacting RNA chains | A/A, C/C |
| Volume | 614.66 Å3 |
| Hydrophobicity | 0.500 |
| Hydrophilicity | 1.121 |
| Buriedness | 0.717 |
| Don/acc character | 0.901 |
| SiteScore | 1.013 |
| D Score | 1.005 |
| Compound | V5Z |
| Residue | . / 103 |
| Chain | DA / D |
| Non-redundant | False |
| Interacting RNA chains | D/D, B/B |
| Volume | 505.92 Å3 |
| Hydrophobicity | 0.615 |
| Hydrophilicity | 1.069 |
| Buriedness | 0.723 |
| Don/acc character | 0.885 |
| SiteScore | 1.017 |
| D Score | 1.025 |