HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8g60

System information

Experimental technique Electron Microscopy
Experimental resolution 2.54
System mass 4008.67 kDa
Deposition year 2023
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 8g60
Reference Holm Mikael, Natchiar S. Kundhavai, Rundlet Emily J., Myasnikov Alexander G., Watson Zoe L., Altman Roger B., Wang Hao-Yuan, Taunton Jack, Blanchard Scott C.. . mRNA decoding in human is kinetically and structurally distinct from bacteria Nature
Equivalence Class NR_all_65061.63
BGSU version: 4.49

Compound 3H3
Residue . / 5117
Chain QH / L5
Non-redundant True
Interacting RNA chains C/L5
RNA environment detailled protein, other
RNA environment global RNA/Other
RNA family chains C/L5: rRNA
RNA family global rRNA
Volume 306.30 Å3
Hydrophobicity 0.523
Hydrophilicity 0.911
Buriedness 0.655
Don/acc character 1.177
SiteScore 0.996
D Score 1.036
Kd

Compound ANM
Residue . / 5101
Chain AH / L5
Non-redundant True
Interacting RNA chains C/L5
RNA environment detailled ion
RNA environment global RNA
RNA family chains C/L5: rRNA
RNA family global rRNA
Volume 668.16 Å3
Hydrophobicity 0.665
Hydrophilicity 1.118
Buriedness 0.794
Don/acc character 1.130
SiteScore 1.064
D Score 1.052
Kd