Complex 8jy0
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.75 |
| System mass | 100.11 kDa |
| Deposition year | 2023 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 8jy0 |
| Reference | Zhang Yufan, Xu Zhonghe, Xiao Yu, Jiang Haodong, Zuo Xiaobing, Li Xing, Fang Xianyang. . Structural mechanisms for binding and activation of a contact-quenched fluorophore by RhoBAST Nature Communications |
| Equivalence Class |
NR_all_62048.3
BGSU version: 4.48 |
| Compound | V8C |
| Residue | . / 205 |
| Chain | K / B |
| Non-redundant | True |
| Interacting RNA chains | B/B |
| RNA environment detailled | other |
| RNA environment global | RNA/Other |
| RNA family chains | B/B: unknown |
| RNA family global | unknown |
| Volume | 201.34 Å3 |
| Hydrophobicity | 0.372 |
| Hydrophilicity | 1.052 |
| Buriedness | 0.599 |
| Don/acc character | 2.101 |
| SiteScore | 1.014 |
| D Score | 0.868 |
| Kd | — |
| Compound | V8C |
| Residue | . / 203 |
| Chain | O / D |
| Non-redundant | True |
| Interacting RNA chains | E/D |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | E/D: unknown |
| RNA family global | unknown |
| Volume | 83.01 Å3 |
| Hydrophobicity | 0.700 |
| Hydrophilicity | 0.841 |
| Buriedness | 0.555 |
| Don/acc character | 4.991 |
| SiteScore | 0.618 |
| D Score | 0.582 |
| Kd | — |
| Compound | V8C |
| Residue | . / 101 |
| Chain | Q / F |
| Non-redundant | False |
| Interacting RNA chains | F/F |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | F/F: unknown |
| RNA family global | unknown |
| Volume | 79.58 Å3 |
| Hydrophobicity | 0.987 |
| Hydrophilicity | 0.894 |
| Buriedness | 0.606 |
| Don/acc character | 2.906 |
| SiteScore | 0.771 |
| D Score | 0.569 |
| Kd | — |