HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 7ryg

System information

Experimental technique Electron Microscopy
Experimental resolution 2.38
System mass 2162.70 kDa
Deposition year 2021
Molecule type RNA/Protein
# RNA entities 1
Organism Acinetobacter
RCSB PDB Entry 7ryg
Reference Morgan Christopher E., Zhang Zhemin, Bonomo Robert A., Yu Edward W.. . An Analysis of the Novel Fluorocycline TP-6076 Bound to Both the Ribosome and Multidrug Efflux Pump AdeJ from Acinetobacter baumannii mBio
Equivalence Class NR_all_43481.6
BGSU version: 4.48

Compound 80P
Residue . / 1601
Chain CB / a
Non-redundant True
Interacting RNA chains EA/a
RNA environment detailled ion
RNA environment global RNA
RNA family chains EA/a: rRNA
RNA family global rRNA
Volume 194.48 Å3
Hydrophobicity 0.451
Hydrophilicity 0.833
Buriedness 0.729
Don/acc character 2.740
SiteScore 0.941
D Score 0.761
Kd

Compound 80P
Residue . / 1602
Chain DB / a
Non-redundant True
Interacting RNA chains EA/a
RNA environment detailled ion, other
RNA environment global RNA/Other
RNA family chains EA/a: rRNA
RNA family global rRNA
Volume 551.89 Å3
Hydrophobicity 0.400
Hydrophilicity 1.005
Buriedness 0.735
Don/acc character 2.659
SiteScore 1.133
D Score 0.990
Kd

Compound 80P
Residue . / 1603
Chain EB / a
Non-redundant True
Interacting RNA chains EA/a
RNA environment detailled ion, other
RNA environment global RNA/Other
RNA family chains EA/a: rRNA
RNA family global rRNA
Volume 183.16 Å3
Hydrophobicity 0.245
Hydrophilicity 1.639
Buriedness 0.765
Don/acc character 2.509
SiteScore 0.582
D Score 0.375
Kd