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Harnessing RIBOnucleic acid - Small molecules Structures

RNA-SM complexes

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1146 RNA-SM complexes found
Structure of complex 8xzq

8xzq

Crystal structure of folE riboswitch with 8-N Guanine

SM: SPM

Structure of complex 8xzr

8xzr

Crystal structure of folE riboswitch with 8-NH2 Guanine

SM: ANG SPM

Structure of complex 8xzw

8xzw

Crystal structure of THF-II riboswitch with THF and soaked with Ir

SM: SPM THG

Structure of complex 8yam

8yam

Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound

SM: A1LYK

Structure of complex 8yan

8yan

Crystal structure of a class I PreQ1 riboswitch complexed with a synthetic compound

SM: A1LYL

Structure of complex 8yno

8yno

RNA duplex containing Formamide

SM: SPM

Structure of complex 8yoo

8yoo

Cryo-EM structure of the human 80S ribosome with 100 um Tigecycline

SM: T1C T1C T1C T1C T1C T1C

Structure of complex 8znq

8znq

Solution structure of the complex of naphthyridine-azaquinolone and an RNA with ACG/AUA motif

SM: NAZ

Structure of complex 9b00

9b00

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with berberine analog of chloramphenicol CAM-BER, mRNA, deacylated A- and E-site tRNAphe, and deacylated P-site tRNAmet at 2.80A resolution

SM: A1AIX A1AIX

Structure of complex 9b4z

9b4z

E. coli 70S ribosome complex (N1-methylated 16S A1408 + arbekacin)

SM: 84G 84G

Structure of complex 9b50

9b50

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

SM: 84G 84G

Structure of complex 9b51

9b51

E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)

SM: GET GET

Structure of complex 9bun

9bun

RhoBAST aptamer RNA in complex with 5(6)-carboxytetramethylrhodamine

SM: FH8 FH8 FH8 FH8

Structure of complex 9bzc

9bzc

Cocrystal structure of Clostridium beijerinckii ZTP riboswitch with ZMP and Cs

SM: AMZ

Structure of complex 9c4g

9c4g

Cutibacterium acnes 50S ribosomal subunit with Clindamycin bound

SM: CLY

Structure of complex 9c6k

9c6k

Cryo-EM structure of the TPP riboswitch embedded in an RNA scaffold bound to thiamine pyrophosphate

SM: TPP

Structure of complex 9cn3

9cn3

Human 39S mitoribosome in complex with antibiotic Linezolid

SM: ZLD

Structure of complex 9cpd

9cpd

Structures of small molecules bound to RNA repeat expansions that cause Huntington's disease-like 2 and myotonic dystrophy type 1

SM: MQC

Structure of complex 9cpg

9cpg

Structures of small molecules bound to RNA repeat expansions that cause Huntington's disease-like 2 and myotonic dystrophy type 1

SM: A1AZM

Structure of complex 9cpi

9cpi

Structures of small molecules bound to RNA repeat expansions that cause Huntington's disease-like 2 and myotonic dystrophy type 1

SM: A1AZL

Structure of complex 9dfe

9dfe

Crystal structure of the wild-type Thermus thermophilus 70S ribosome in complex with lasso peptide lariocidin and protein Y at 2.60A resolution

SM: ARG

Structure of complex 9did

9did

Rous sarcoma virus frameshifting pseudoknot RNA

SM: TAM

Structure of complex 9dll

9dll

NMR structures of small molecules bound to a model of an RNA CAG repeat expansion.

SM: A1AZM

Structure of complex 9dlm

9dlm

NMR structures of small molecules bound to a model of an RNA CAG repeat expansion.

SM: A1AZL

Structure of complex 9dln

9dln

NMR structures of small molecules bound to a model of an RNA CAG repeat expansion

SM: MQC

Structure of complex 9dov

9dov

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B

SM: HYG

Structure of complex 9dp7

9dp7

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

SM: HYG

Structure of complex 9dxl

9dxl

RhoBAST RNA aptamer in complex with the SpyRho555 analogue, MaP555

SM: A1BC9

Structure of complex 9e6q

9e6q

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

SM: SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM

Structure of complex 9e71

9e71

Cryo-EM structure of the Pyrobaculum calidifontis 70S ribosome

SM: SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM

Structure of complex 9e7f

9e7f

Cryo-EM structure of the Pyrobaculum calidifontis 70S ribosome in complex with Dri

SM: SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM

Structure of complex 9ebp

9ebp

Structure of the Bacillus subtilis yjdF riboswitch complexed with lumichrome in the presence of iridium hexammine

SM: LUM LUM

Structure of complex 9ebv

9ebv

Structure of the Bacillus subtilis yjdF riboswitch aptamer domain in complex with lumichrome

SM: LUM LUM

Structure of complex 9ec4

9ec4

Structure of the Bacillus subtilis yjdF riboswitch aptamer domain in complex with chelerythrine

SM: CTI CTI

Structure of complex 9f1b

9f1b

Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E

SM: SPM SPM SPM

Structure of complex 9f1c

9f1c

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

SM: SPM SPM SPM

Structure of complex 9f1d

9f1d

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

SM: SPM SPM SPM

Structure of complex 9fco

9fco

Structure of E. coli 30S-IF1-IF3-mRNA-Kasugamycin complex

SM: KSG

Structure of complex 9fda

9fda

Structure of E. coli 30S-IF1-IF3-mRNA-Edeine complex

SM: EDE

Structure of complex 9fhl

9fhl

High-resolution cryo-EM structure of Saccharolobus solfataricus 30S ribosomal subunit bound to mRNA and initiator tRNA

SM: SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM

Structure of complex 9fn2

9fn2

Crystal structure of the alkyltransferase ribozyme SAMURI co-crystallized with SAM

SM: SAH SAH

Structure of complex 9fn3

9fn3

Crystal structure of the alkyltransferase ribozyme SAMURI co-crystalized with ProSeDMA

SM: A1IY6 A1IY6

Structure of complex 9fqz

9fqz

CRYO-EM STRUCTURE OF HCT15 POLYSOMES BOUND TO EEF2, EBP1, AND SERBP1

SM: 3HE ANM GDP HYG

Structure of complex 9fra

9fra

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-MAP leaderless mRNA

SM: SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM

Structure of complex 9frk

9frk

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA

SM: SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM

Structure of complex 9frl

9frl

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA with h44 in up position

SM: SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM

Structure of complex 9fs6

9fs6

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-aIF2beta leaderless mRNA with h44 in up position

SM: SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM

Structure of complex 9fs8

9fs8

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-aEF1A-like mRNA

SM: SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM

Structure of complex 9fsf

9fsf

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-MAP leaderless mRNA with h44 in up position

SM: SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM

Structure of complex 9fxo

9fxo

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-SITE TRNA AND MRNA : LM32CS1C1 M2 OE MUTANT

SM: PAR PAR PAR PAR PAR PAR

Structure of complex 9fy0

9fy0

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-aIF2beta leaderless mRNA

SM: SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM SPM

Structure of complex 9g1z

9g1z

Structure of Candida albicans 80S ribosome in complex with mefloquine (non-rotated state)

SM: SPK YMZ YMZ

Structure of complex 9g30

9g30

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) shows strong density for the A site tRNA

SM: GET GET GET GET GET GET GET GET GET GET GET GET GET GET GET GET GET SPK

Structure of complex 9g6j

9g6j

The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA

SM: GET GET GET GET GET GET GET GET GET GET GET GET GET GET GET GET SPK YMZ

Structure of complex 9gr1

9gr1

E. coli 70S-TEC complex in delivery state

SM: PHE

Structure of complex 9gxx

9gxx

70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon

SM: SPM

Structure of complex 9h0l

9h0l

70S ribosome with cognate tRNASer3 bound to A-site AGC codon

SM: SPM

Structure of complex 9h51

9h51

Assembly intermediate of human mitochondrial ribosome small subunit in complex with PUS1, METTL15 and RBFA(IN conformation) (state M1)

SM: NAD SPM

Structure of complex 9h6i

9h6i

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

SM: EPE TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER

Structure of complex 9hes

9hes

Structure of the Arabidopsis thaliana 80S ribosome OVAC mutant in complex with P- and E-site tRNAs, mRNA, and thermospermine

SM: EPE TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER TER