Complex 8yno
System information
| Experimental technique | X-ray |
| Experimental resolution | 1.30 |
| System mass | 8.07 kDa |
| Deposition year | 2024 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 8yno |
| Reference | Nomura Kohei, An Seongjin, Kobayashi Yoshiaki, Kondo Jiro, Shi Ting, Murase Hirotaka, Nakamoto Kosuke, Kimura Yasuaki, Abe Naoko, Ui-Tei Kumiko, Abe Hiroshi. . Synthesis of 2′-formamidonucleoside phosphoramidites for suppressing the seed-based off-target effects of siRNAs Nucleic Acids Research |
| Equivalence Class |
NR_all_57016.3
BGSU version: 4.49 |
| Compound | SPM |
| Residue | . / 101 |
| Chain | C / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: synthetic construct |
| RNA family global | synthetic construct |
| Volume | 107.70 Å3 |
| Hydrophobicity | 0.044 |
| Hydrophilicity | 0.692 |
| Buriedness | 0.528 |
| Don/acc character | 1.670 |
| SiteScore | 1.104 |
| D Score | 1.031 |
| Kd | — |