Complex 9ebv
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.52 |
| System mass | 53.43 kDa |
| Deposition year | 2024 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | Bacillus |
| RCSB PDB Entry | 9ebv |
| Reference | Spradlin Savannah F, Dickerson Kyle A, Batey Robert T. . Structural and functional clues challenge the hypothesis that the yjdF riboswitch is natively regulated through broad recognition of azaaromatic compounds Nucleic Acids Research |
| Equivalence Class |
NR_all_02670.1
BGSU version: 4.49 |
| Compound | LUM |
| Residue | . / 109 |
| Chain | K / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: riboswitch |
| RNA family global | riboswitch |
| Volume | 780.67 Å3 |
| Hydrophobicity | 0.987 |
| Hydrophilicity | 0.997 |
| Buriedness | 0.761 |
| Don/acc character | 1.824 |
| SiteScore | 1.201 |
| D Score | 1.071 |
| Kd | — |
| Compound | LUM |
| Residue | . / 110 |
| Chain | U / M |
| Non-redundant | True |
| Interacting RNA chains | B/M |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | B/M: riboswitch |
| RNA family global | riboswitch |
| Volume | 746.71 Å3 |
| Hydrophobicity | 1.070 |
| Hydrophilicity | 0.916 |
| Buriedness | 0.756 |
| Don/acc character | 1.538 |
| SiteScore | 1.213 |
| D Score | 1.095 |
| Kd | — |