Complex 9fn3
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.90 |
| System mass | 38.68 kDa |
| Deposition year | 2024 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 9fn3 |
| Reference | Chen Hsuan-Ai, Okuda Takumi, Lenz Ann-Kathrin, Scheitl Carolin P. M., Schindelin Hermann, Höbartner Claudia. 2026. Structure and catalytic activity of the SAM-utilizing ribozyme SAMURI Nature Chemical Biology |
| Equivalence Class |
NR_all_22241.3,
NR_all_72735.3
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | A1IY6 |
| Residue | . / 101 |
| Chain | C / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/A: ribozyme |
| RNA family global | ribozyme |
| Volume | 585.50 Å3 |
| Hydrophobicity | 0.572 |
| Hydrophilicity | 0.943 |
| Buriedness | 0.681 |
| Don/acc character | 1.824 |
| SiteScore | 1.158 |
| D Score | 1.041 |
| Kd | — |
| Compound | A1IY6 |
| Residue | . / 101 |
| Chain | G / B |
| Non-redundant | False |
| Interacting RNA chains | B/B |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | B/B: ribozyme |
| RNA family global | ribozyme |
| Volume | 533.37 Å3 |
| Hydrophobicity | 0.675 |
| Hydrophilicity | 0.925 |
| Buriedness | 0.676 |
| Don/acc character | 1.589 |
| SiteScore | 1.157 |
| D Score | 1.044 |
| Kd | — |