Complex 9ebp
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.70 |
| System mass | 55.85 kDa |
| Deposition year | 2024 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | N/A |
| RCSB PDB Entry | 9ebp |
| Reference | Spradlin Savannah F, Dickerson Kyle A, Batey Robert T. . Structural and functional clues challenge the hypothesis that the yjdF riboswitch is natively regulated through broad recognition of azaaromatic compounds Nucleic Acids Research |
| Equivalence Class |
NR_all_02670.1
BGSU version: 4.49 |
| Compound | LUM |
| Residue | . / 101 |
| Chain | C / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: riboswitch |
| RNA family global | riboswitch |
| Volume | 799.19 Å3 |
| Hydrophobicity | 0.983 |
| Hydrophilicity | 0.937 |
| Buriedness | 0.775 |
| Don/acc character | 1.781 |
| SiteScore | 1.222 |
| D Score | 1.099 |
| Kd | — |
| Compound | LUM |
| Residue | . / 101 |
| Chain | J / M |
| Non-redundant | True |
| Interacting RNA chains | B/M |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | B/M: riboswitch |
| RNA family global | riboswitch |
| Volume | 797.48 Å3 |
| Hydrophobicity | 0.939 |
| Hydrophilicity | 0.983 |
| Buriedness | 0.770 |
| Don/acc character | 1.630 |
| SiteScore | 1.209 |
| D Score | 1.082 |
| Kd | — |