Complex 9did
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.80 |
| System mass | 75.84 kDa |
| Deposition year | 2024 |
| Molecule type | RNA |
| # RNA entities | 1 |
| Organism | Alpharetrovirus |
| RCSB PDB Entry | 9did |
| Reference | Jones Christopher P., Ferré-D’Amaré Adrian R.. 2025. Structural switching dynamically controls the doubly pseudoknotted Rous sarcoma virus–programmed ribosomal frameshifting element Proceedings of the National Academy of Sciences |
| Equivalence Class |
NR_all_12146.2
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | TAM |
| Residue | . / 209 |
| Chain | K / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/A: unknown |
| RNA family global | unknown |
| Volume | 399.94 Å3 |
| Hydrophobicity | 0.037 |
| Hydrophilicity | 1.123 |
| Buriedness | 0.725 |
| Don/acc character | 1.384 |
| SiteScore | 0.932 |
| D Score | 0.706 |
| Kd | — |