HARIBOSS - RNA-SM complexes list

7azy

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Context-specific inhibition of eukaryotic translation by macrolide antibiotics

SM: TEL

7b5k

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E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.

SM: ERY SY5 SY5

7bt6

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Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.12 Angstroms resolution(state R1)

SM: GTP

7btb

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Cryo-EM structure of pre-60S ribosome from Saccharomyces cerevisiae rpl4delta63-87 strain at 3.22 Angstroms resolution(state R2)

SM: GTP

7ctt

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Cryo-EM structure of Favipiravir bound to replicating polymerase complex of SARS-CoV-2 in the pre-catalytic state.

SM: GE6

7d7v

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Crystal Structure of the Domain1 of NAD+ Riboswitch with nicotinamide adenine dinucleotide (NAD+) and U1A protein

SM: GTP NAD

7d8c

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Crystal structure of the Cas12i1-crRNA binary complex

SM: CIT

7dug

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Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''TFMS bound

SM: HJR

7duh

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Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''AC bound

SM: HJO

7dui

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Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1''PyrS bound

SM: HKO

7duj

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Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''Bz bound

SM: SIS

7duk

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Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N1,3''MS bound

SM: SIS

7dul

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Crystal structure of the Thermus thermophilus (HB8) 30S ribosomal subunit with mRNA and cognate transfer RNA anticodon stem-loop and sisomicin derivative N3''MS bound

SM: SIS

7dwh

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Complex structure of SAM-dependent methyltransferase ribozyme

SM: SAM SAM

7ed5

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A dual mechanism of action of AT-527 against SARS-CoV-2 polymerase

SM: AT9

7f0d

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Cryo-EM structure of Mycobacterium tuberculosis 50S ribosome subunit bound with clarithromycin

SM: CTY

7jyy

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Crystal Structure of SARS-CoV-2 Nsp16/10 Heterodimer in Complex with (m7GpppA)pUpUpApApA (Cap-0) and S-Adenosylmethionine (SAM).

SM: SAM SAM

7jz0

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Crystal Structure of SARS-CoV-2 Nsp16/10 Heterodimer in Complex with (m7GpppA2m)pUpUpApApA (Cap-1) and S-Adenosyl-L-homocysteine (SAH).

SM: SAH SAH

7k00

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Structure of the Bacterial Ribosome at 2 Angstrom Resolution

SM: PAR SPM

7k51

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Mid-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure II)

SM: GCP

7k55

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Near post-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure III-FS)

SM: GCP

7k98

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Preaminoacylation complex of M. tuberculosis PheRS with cognate precursor tRNA and 5'-O-(N-phenylalanyl)sulfamoyl-adenosine (F-AMS)

SM: W5Y W5Y

7k9d

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Crystal structure of Bacillus halodurans OapB in complex with its OLE RNA target (crystal form I)

SM: EPE

7kkv

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Crystal structure of Bacillus halodurans OapB in complex with its OLE RNA target (native, crystal form I)

SM: EPE

7l6r

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Crystal Structure of SARS-CoV-2 Nsp16/10 Heterodimer in Complex with (m7GpppA2m)pUpUpApApA (Cap-1), S-Adenosyl-L-homocysteine (SAH) and Manganese (Mn).

SM: SAH

7l6t

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Crystal Structure of SARS-CoV-2 Nsp16/10 Heterodimer in Complex with (m7GpppA2m)pUpUpApApA (Cap-1), S-Adenosyl-L-homocysteine (SAH) and two Magnesium (Mg) ions.

SM: SAH

7lh5

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Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

SM: EDS EDS

7m4u

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A. baumannii Ribosome-Eravacycline complex: 30S

SM: YQM

7m4v

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A. baumannii Ribosome-Eravacycline complex: 50S

SM: YQM YQM

7m4w

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A. baumannii Ribosome-Eravacycline complex: Empty 70S

SM: YQM YQM YQM

7m4x

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A. baumannii Ribosome-Eravacycline complex: P-site tRNA 70S

SM: YQM YQM YQM

7m4y

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A. baumannii Ribosome-Eravacycline complex: E-site tRNA 70S

SM: YQM YQM YQM

7m4z

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A. baumannii Ribosome-Eravacycline complex: hpf-bound 70S

SM: YQM YQM

7md7

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Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

SM: ARG ARG YXM YXM

7mdz

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80S rabbit ribosome stalled with benzamide-CHX

SM: Z2V

7mjv

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MiaB in the complex with s-adenosylmethionine and RNA

SM: SAM

7mjw

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Methylated MiaB in the complex with 5'-deoxyadenosine, methionine and RNA

SM: 5AD 5AD ZKP ZKP

7mjx

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MiaB in the complex with 5'-deoxyadenosine, methionine and RNA

SM: 5AD 5AD

7n1p

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Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation

SM: ATP ATP ATP

7n2c

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Elongating 70S ribosome complex in a fusidic acid-stalled intermediate state of translocation bound to EF-G(GDP) (INT2)

SM: ATP ATP FUA

7n2u

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Elongating 70S ribosome complex in a hybrid-H1 pre-translocation (PRE-H1) conformation

SM: ATP ATP

7n2v

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Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)

SM: ATP ATP GTP SCM SCM SCM

7n30

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Elongating 70S ribosome complex in a hybrid-H2* pre-translocation (PRE-H2*) conformation

SM: ATP ATP

7n31

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Elongating 70S ribosome complex in a post-translocation (POST) conformation

SM: ATP ATP

7n8b

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Cycloheximide bound vacant 80S structure isolated from cbf5-D95A

SM: 3HE

7nac

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State E2 nucleolar 60S ribosomal biogenesis intermediate - Composite model

SM: SAH

7naf

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State E2 nucleolar 60S ribosomal biogenesis intermediate - Spb1-MTD local model

SM: SAH

7nqh

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55S mammalian mitochondrial ribosome with mtRF1a and P-site tRNAMet

SM: 5GP 5GP SPM SPM SPM

7nql

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55S mammalian mitochondrial ribosome with ICT1 and P site tRNAMet

SM: 5GP 5GP SPM SPM SPM

7nsh

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39S mammalian mitochondrial large ribosomal subunit with mtRRF (post) and mtEFG2

SM: 5GP 5GP SPM SPM

7nsi

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55S mammalian mitochondrial ribosome with mtRRF (pre) and tRNA(P/E)

SM: 5GP SPM SPM SPM

7nsj

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55S mammalian mitochondrial ribosome with tRNA(P/P) and tRNA(E*)

SM: 5GP SPM SPM SPM

7nso

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Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with P-tRNA

SM: ERY

7nsp

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Structure of ErmDL-Erythromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA

SM: ERY

7nsq

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Structure of ErmDL-Telithromycin-stalled 70S E. coli ribosomal complex with A and P-tRNA

SM: TEL

7nwg

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Mammalian pre-termination 80S ribosome with Hybrid P/E- and A/P-site tRNA's bound by Blasticidin S.

SM: BLS

7nwi

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Mammalian pre-termination 80S ribosome with Empty-A site bound by Blasticidin S

SM: BLS

7o19

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Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophan

SM: TRP

7o1a

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Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophan

SM: TRP

7o1c

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Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophan

SM: TRP