HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 7m4z

System information

Experimental technique Electron Microscopy
Experimental resolution 2.92
System mass 2154.16 kDa
Deposition year 2021
Molecule type RNA/Protein
# RNA entities 1
Organism Acinetobacter
RCSB PDB Entry 7m4z
Reference Zhang Zhemin, Morgan Christopher E., Bonomo Robert A., Yu Edward W.. . Cryo-EM Determination of Eravacycline-Bound Structures of the Ribosome and the Multidrug Efflux Pump AdeJ of Acinetobacter baumannii mBio
Equivalence Class NR_all_96169.5
BGSU version: 4.48

Compound YQM
Residue . / 3201
Chain BB / A
Non-redundant True
Interacting RNA chains E/A
RNA environment detailled ion, other
RNA environment global RNA/Other
RNA family chains E/A: rRNA
RNA family global rRNA
Volume 457.91 Å3
Hydrophobicity 0.020
Hydrophilicity 1.433
Buriedness 0.690
Don/acc character 1.104
SiteScore 1.145
D Score 0.887
Kd

Compound YQM
Residue . / 3202
Chain CB / A
Non-redundant True
Interacting RNA chains E/A
RNA environment detailled ion, other
RNA environment global RNA/Other
RNA family chains E/A: rRNA
RNA family global rRNA
Volume 273.71 Å3
Hydrophobicity 0.052
Hydrophilicity 1.524
Buriedness 0.707
Don/acc character 1.313
SiteScore 0.986
D Score 0.649
Kd