HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 7n2v

System information

Experimental technique Electron Microscopy
Experimental resolution 2.54
System mass 2349.54 kDa
Deposition year 2021
Molecule type RNA/Protein
# RNA entities 1
Organism Escherichia
RCSB PDB Entry 7n2v
Reference Rundlet Emily J., Holm Mikael, Schacherl Magdalena, Natchiar S. Kundhavai, Altman Roger B., Spahn Christian M. T., Myasnikov Alexander G., Blanchard Scott C.. . Structural basis of early translocation events on the ribosome Nature

Compound ATP
Residue . / 3002
Chain CE / 23
Non-redundant True
Interacting RNA chains W/23
Volume 40.82 Å3
Hydrophobicity 0.442
Hydrophilicity 1.004
Buriedness 0.592
Don/acc character 0.965
SiteScore 0.477
D Score 0.380

Compound ATP
Residue . / 3003
Chain DE / 23
Non-redundant True
Interacting RNA chains W/23
Volume 151.61 Å3
Hydrophobicity 0.330
Hydrophilicity 1.254
Buriedness 0.649
Don/acc character 1.321
SiteScore 1.006
D Score 0.778

Compound GTP
Residue . / 901
Chain MP / EF
Non-redundant True
Interacting RNA chains W/23
Volume 465.45 Å3
Hydrophobicity 0.141
Hydrophilicity 1.991
Buriedness 0.855
Don/acc character 0.661
SiteScore 1.105
D Score 0.804

Compound SCM
Residue . / 1601
Chain HB / 16
Non-redundant True
Interacting RNA chains A/16
Volume 739.85 Å3
Hydrophobicity 0.134
Hydrophilicity 1.379
Buriedness 0.781
Don/acc character 1.595
SiteScore 1.206
D Score 0.959

Compound SCM
Residue . / 1602
Chain IB / 16
Non-redundant True
Interacting RNA chains A/16
Volume 60.37 Å3
Hydrophobicity 0.060
Hydrophilicity 1.104
Buriedness 0.547
Don/acc character 1.189
SiteScore 0.618
D Score 0.356

Compound SCM
Residue . / 3001
Chain BE / 23
Non-redundant True
Interacting RNA chains W/23
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -