Complex 7m4u
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.71 |
| System mass | 792.41 kDa |
| Deposition year | 2021 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Acinetobacter |
| RCSB PDB Entry | 7m4u |
| Reference | Zhang Zhemin, Morgan Christopher E., Bonomo Robert A., Yu Edward W.. 2021. Cryo-EM Determination of Eravacycline-Bound Structures of the Ribosome and the Multidrug Efflux Pump AdeJ of Acinetobacter baumannii mBio |
| Equivalence Class |
NR_all_43481.6
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | YQM |
| Residue | . / 1601 |
| Chain | V / a |
| Non-redundant | True |
| Interacting RNA chains | A/a |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/a: rRNA |
| RNA family global | rRNA |
| Volume | 185.22 Å3 |
| Hydrophobicity | 0.379 |
| Hydrophilicity | 1.018 |
| Buriedness | 0.737 |
| Don/acc character | 1.755 |
| SiteScore | 0.870 |
| D Score | 0.658 |
| Kd | — |