Complex 7nqh
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 3.50 |
| System mass | 3121.26 kDa |
| Deposition year | 2021 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Sus |
| RCSB PDB Entry | 7nqh |
| Reference | Kummer Eva, Schubert Katharina Noel, Schoenhut Tanja, Scaiola Alain, Ban Nenad. 2021. Structural basis of translation termination, rescue, and recycling in mammalian mitochondria Molecular Cell |
| Equivalence Class |
NR_all_24610.5,
NR_all_19551.9
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | 5GP |
| Residue | . / 1791 |
| Chain | BP / BA |
| Non-redundant | True |
| Interacting RNA chains | OC/BA |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | OC/BA: rRNA |
| RNA family global | rRNA |
| Volume | 349.86 Å3 |
| Hydrophobicity | 0.194 |
| Hydrophilicity | 1.125 |
| Buriedness | 0.672 |
| Don/acc character | 2.175 |
| SiteScore | 1.133 |
| D Score | 0.977 |
| Kd | — |
| Compound | 5GP |
| Residue | . / 1792 |
| Chain | CP / BA |
| Non-redundant | True |
| Interacting RNA chains | OC/BA |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | OC/BA: rRNA |
| RNA family global | rRNA |
| Volume | 360.49 Å3 |
| Hydrophobicity | 0.274 |
| Hydrophilicity | 1.807 |
| Buriedness | 0.656 |
| Don/acc character | 0.368 |
| SiteScore | 1.122 |
| D Score | 0.744 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3001 |
| Chain | GD / AA |
| Non-redundant | True |
| Interacting RNA chains | AB/AA |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | AB/AA: rRNA |
| RNA family global | rRNA |
| Volume | 757.34 Å3 |
| Hydrophobicity | 0.131 |
| Hydrophilicity | 1.377 |
| Buriedness | 0.760 |
| Don/acc character | 1.503 |
| SiteScore | 1.191 |
| D Score | 0.947 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1793 |
| Chain | DP / BA |
| Non-redundant | True |
| Interacting RNA chains | OC/BA |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | OC/BA: rRNA |
| RNA family global | rRNA |
| Volume | 648.27 Å3 |
| Hydrophobicity | 0.289 |
| Hydrophilicity | 1.194 |
| Buriedness | 0.809 |
| Don/acc character | 2.144 |
| SiteScore | 1.074 |
| D Score | 1.036 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1794 |
| Chain | EP / BA |
| Non-redundant | True |
| Interacting RNA chains | OC/BA |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | OC/BA: rRNA |
| RNA family global | rRNA |
| Volume | 533.02 Å3 |
| Hydrophobicity | 0.146 |
| Hydrophilicity | 1.133 |
| Buriedness | 0.746 |
| Don/acc character | 1.285 |
| SiteScore | 1.032 |
| D Score | 1.018 |
| Kd | — |