Complex 7nql
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 3.40 |
| System mass | 3100.50 kDa |
| Deposition year | 2021 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Sus |
| RCSB PDB Entry | 7nql |
| Reference | Kummer Eva, Schubert Katharina Noel, Schoenhut Tanja, Scaiola Alain, Ban Nenad. 2021. Structural basis of translation termination, rescue, and recycling in mammalian mitochondria Molecular Cell |
| Equivalence Class |
NR_all_24610.5,
NR_all_19551.9
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | 5GP |
| Residue | . / 3211 |
| Chain | SK / BA |
| Non-redundant | True |
| Interacting RNA chains | D/BA |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | D/BA: rRNA |
| RNA family global | rRNA |
| Volume | 361.52 Å3 |
| Hydrophobicity | 0.204 |
| Hydrophilicity | 0.998 |
| Buriedness | 0.656 |
| Don/acc character | 2.316 |
| SiteScore | 1.130 |
| D Score | 1.008 |
| Kd | — |
| Compound | 5GP |
| Residue | . / 3212 |
| Chain | TK / BA |
| Non-redundant | True |
| Interacting RNA chains | D/BA |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | D/BA: rRNA |
| RNA family global | rRNA |
| Volume | 275.77 Å3 |
| Hydrophobicity | 0.234 |
| Hydrophilicity | 1.805 |
| Buriedness | 0.651 |
| Don/acc character | 0.551 |
| SiteScore | 1.119 |
| D Score | 0.743 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3213 |
| Chain | UK / BA |
| Non-redundant | True |
| Interacting RNA chains | D/BA |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | D/BA: rRNA |
| RNA family global | rRNA |
| Volume | 646.56 Å3 |
| Hydrophobicity | 0.236 |
| Hydrophilicity | 1.276 |
| Buriedness | 0.813 |
| Don/acc character | 1.702 |
| SiteScore | 1.077 |
| D Score | 1.012 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3214 |
| Chain | VK / BA |
| Non-redundant | True |
| Interacting RNA chains | D/BA |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | D/BA: rRNA |
| RNA family global | rRNA |
| Volume | 555.32 Å3 |
| Hydrophobicity | 0.160 |
| Hydrophilicity | 1.195 |
| Buriedness | 0.736 |
| Don/acc character | 1.299 |
| SiteScore | 1.025 |
| D Score | 0.992 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3001 |
| Chain | NL / AA |
| Non-redundant | True |
| Interacting RNA chains | UA/AA |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | UA/AA: rRNA |
| RNA family global | rRNA |
| Volume | 656.16 Å3 |
| Hydrophobicity | 0.135 |
| Hydrophilicity | 1.151 |
| Buriedness | 0.798 |
| Don/acc character | 2.713 |
| SiteScore | 1.217 |
| D Score | 1.044 |
| Kd | — |