Complex 7jz0
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | X-ray |
| Experimental resolution | 2.15 |
| System mass | 103.54 kDa |
| Deposition year | 2020 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Betacoronavirus |
| RCSB PDB Entry | 7jz0 |
| Reference | Minasov George, Rosas-Lemus Monica, Shuvalova Ludmilla, Inniss Nicole L., Brunzelle Joseph S., Daczkowski Courtney M., Hoover Paul, Mesecar Andrew D., Satchell Karla J. F.. 2021. Mn 2+ coordinates Cap-0-RNA to align substrates for efficient 2′- O -methyl transfer by SARS-CoV-2 nsp16 preprint (bioRxiv) |
| Equivalence Class |
NR_all_11762.6
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | SAH |
| Residue | . / 7101 |
| Chain | G / A |
| Non-redundant | False |
| Interacting RNA chains | E/E |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | E/E: unknown |
| RNA family global | unknown |
| Volume | 242.16 Å3 |
| Hydrophobicity | 0.612 |
| Hydrophilicity | 1.088 |
| Buriedness | 0.699 |
| Don/acc character | 1.348 |
| SiteScore | 1.000 |
| D Score | 1.004 |
| Kd | — |
| Compound | SAH |
| Residue | . / 7101 |
| Chain | T / C |
| Non-redundant | False |
| Interacting RNA chains | F/F |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | F/F: unknown |
| RNA family global | unknown |
| Volume | 234.61 Å3 |
| Hydrophobicity | 0.689 |
| Hydrophilicity | 1.084 |
| Buriedness | 0.698 |
| Don/acc character | 1.242 |
| SiteScore | 1.000 |
| D Score | 1.005 |
| Kd | — |