Complex 7nsj
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 3.90 |
| System mass | 3097.03 kDa |
| Deposition year | 2021 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Sus |
| RCSB PDB Entry | 7nsj |
| Reference | Kummer Eva, Schubert Katharina Noel, Schoenhut Tanja, Scaiola Alain, Ban Nenad. 2021. Structural basis of translation termination, rescue, and recycling in mammalian mitochondria Molecular Cell |
| Equivalence Class |
NR_all_24610.5,
NR_all_19551.9
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | 5GP |
| Residue | . / 1791 |
| Chain | NO / BA |
| Non-redundant | True |
| Interacting RNA chains | AB/BA |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | AB/BA: rRNA |
| RNA family global | rRNA |
| Volume | 380.39 Å3 |
| Hydrophobicity | 0.122 |
| Hydrophilicity | 1.870 |
| Buriedness | 0.647 |
| Don/acc character | 0.436 |
| SiteScore | 1.116 |
| D Score | 0.719 |
| Kd | — |
| Compound | SPM |
| Residue | . / 3001 |
| Chain | FD / AA |
| Non-redundant | True |
| Interacting RNA chains | YA/AA |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | YA/AA: rRNA |
| RNA family global | rRNA |
| Volume | 601.28 Å3 |
| Hydrophobicity | 0.190 |
| Hydrophilicity | 1.195 |
| Buriedness | 0.798 |
| Don/acc character | 2.402 |
| SiteScore | 1.217 |
| D Score | 1.029 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1792 |
| Chain | OO / BA |
| Non-redundant | True |
| Interacting RNA chains | AB/BA |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | AB/BA: rRNA |
| RNA family global | rRNA |
| Volume | 622.20 Å3 |
| Hydrophobicity | 0.318 |
| Hydrophilicity | 1.206 |
| Buriedness | 0.803 |
| Don/acc character | 1.548 |
| SiteScore | 1.070 |
| D Score | 1.029 |
| Kd | — |
| Compound | SPM |
| Residue | . / 1793 |
| Chain | PO / BA |
| Non-redundant | True |
| Interacting RNA chains | AB/BA |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | AB/BA: rRNA |
| RNA family global | rRNA |
| Volume | 562.52 Å3 |
| Hydrophobicity | 0.193 |
| Hydrophilicity | 1.199 |
| Buriedness | 0.765 |
| Don/acc character | 0.886 |
| SiteScore | 1.045 |
| D Score | 1.008 |
| Kd | — |