HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 7m4v

System information

Experimental technique Electron Microscopy
Experimental resolution 2.54
System mass 1350.31 kDa
Deposition year 2021
Molecule type RNA/Protein
# RNA entities 1
Organism Acinetobacter
RCSB PDB Entry 7m4v
Reference Zhang Zhemin, Morgan Christopher E., Bonomo Robert A., Yu Edward W.. . Cryo-EM Determination of Eravacycline-Bound Structures of the Ribosome and the Multidrug Efflux Pump AdeJ of Acinetobacter baumannii mBio
Equivalence Class NR_all_96169.5
BGSU version: 4.48

Compound YQM
Residue . / 3201
Chain FA / A
Non-redundant True
Interacting RNA chains E/A
RNA environment detailled ion, other
RNA environment global RNA/Other
RNA family chains E/A: rRNA
RNA family global rRNA
Volume 500.44 Å3
Hydrophobicity 0.031
Hydrophilicity 1.651
Buriedness 0.672
Don/acc character 0.892
SiteScore 1.132
D Score 0.805
Kd

Compound YQM
Residue . / 3202
Chain GA / A
Non-redundant True
Interacting RNA chains E/A
RNA environment detailled ion, other
RNA environment global RNA/Other
RNA family chains E/A: rRNA
RNA family global rRNA
Volume 184.88 Å3
Hydrophobicity 0.059
Hydrophilicity 1.532
Buriedness 0.713
Don/acc character 1.317
SiteScore 0.867
D Score 0.492
Kd