HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 7dwh

System information

Experimental technique X-ray
Experimental resolution 3.10
System mass 76.81 kDa
Deposition year 2021
Molecule type RNA/Protein
# RNA entities 1
Organism N/A
RCSB PDB Entry 7dwh
Reference Jiang Hengyi, Gao Yanqing, Zhang Lei, Chen Dongrong, Gan Jianhua, Murchie Alastair I. H.. . The identification and characterization of a selected SAM-dependent methyltransferase ribozyme that is present in natural sequences Nature Catalysis

Compound SAM
Residue . / 102
Chain H / X
Non-redundant True
Interacting RNA chains E/X
RNA environment detailled ion
RNA environment global RNA
RNA family chains E/X: ribozyme
RNA family global ribozyme
Volume 251.76 Å3
Hydrophobicity 0.163
Hydrophilicity 0.869
Buriedness 0.638
Don/acc character 4.472
SiteScore 0.939
D Score 0.777
Kd

Compound SAM
Residue . / 102
Chain J / Y
Non-redundant True
Interacting RNA chains F/Y
RNA environment detailled ion
RNA environment global RNA
RNA family chains F/Y: ribozyme
RNA family global ribozyme
Volume 163.61 Å3
Hydrophobicity 0.337
Hydrophilicity 0.811
Buriedness 0.628
Don/acc character 3.372
SiteScore 0.848
D Score 0.668
Kd