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Harnessing RIBOnucleic acid - Small molecules Structures

Compound YQM

Identifiers

  • Canonical SMILES:
    CN(C)[C@H]1[C@@H]2C[C@@H]3Cc4c(F)cc(NC(=O)CN5CCCC5)c(O)c4C(=C3C(=O)[C@]2(O)C(=C(C(N)=O)C1=O)O)O
  • IUPAC name:
    (4S,4aS,5aR,12aR)-4-(dimethylamino)-7-fluoro-1,10,11,12a-tetrahydroxy-3,12-dioxo-9-[2-(pyrrolidin-1-yl)acetamido]-3,4,4a,5,5a,6,12,12a-octahydrotetracene-2-carboxamide
  • InChi:
    InChI=1S/C27H31FN4O8/c1-31(2)20-13-8-11-7-12-14(28)9-15(30-16(33)10-32-5-3-4-6-32)21(34)18(12)22(35)17(11)24(37)27(13,40)25(38)19(23(20)36)26(29)39/h9,11,13,20,34-35,38,40H,3-8,10H2,1-2H3,(H2,29,39)(H,30,33)/t11-,13-,20-,27-/m0/s1
  • InChiKey:
    AKLMFDDQCHURPW-ISIOAQNYSA-N
  • SMARTS:
    [#6]-[#7](-[#6])-[#6@H]1-[#6@@H]2-[#6]-[#6@@H]3-[#6]-[#6]4:[#6](-[#9]):[#6]:[#6](-[#7]-[#6](=[#8])-[#6]-[#7]5-[#6]-[#6]-[#6]-[#6]-5):[#6](-[#8]):[#6]:4-[#6](=[#6]-3-[#6](=[#8])-[#6@]-2(-[#8])-[#6](=[#6](-[#6](-[#7])=[#8])-[#6]-1=[#8])-[#8])-[#8]

Chemistry rules

Lipinski's RO5 Veber Pfizer's 3/75

External links

RNA-SM complexes

PDB code Deposition date Reference publication
7m4u March 22, 2021 Zhang Zhemin, Morgan Christopher E., Bonomo Robert A., Yu Edward W.. 2021. Cryo-EM Determination of Eravacycline-Bound Structures of the Ribosome and the Multidrug Efflux Pump AdeJ of Acinetobacter baumannii mBio
7m4v March 22, 2021 Zhang Zhemin, Morgan Christopher E., Bonomo Robert A., Yu Edward W.. 2021. Cryo-EM Determination of Eravacycline-Bound Structures of the Ribosome and the Multidrug Efflux Pump AdeJ of Acinetobacter baumannii mBio
7m4v March 22, 2021 Zhang Zhemin, Morgan Christopher E., Bonomo Robert A., Yu Edward W.. 2021. Cryo-EM Determination of Eravacycline-Bound Structures of the Ribosome and the Multidrug Efflux Pump AdeJ of Acinetobacter baumannii mBio
7m4w March 22, 2021 Zhang Zhemin, Morgan Christopher E., Bonomo Robert A., Yu Edward W.. 2021. Cryo-EM Determination of Eravacycline-Bound Structures of the Ribosome and the Multidrug Efflux Pump AdeJ of Acinetobacter baumannii mBio
7m4w March 22, 2021 Zhang Zhemin, Morgan Christopher E., Bonomo Robert A., Yu Edward W.. 2021. Cryo-EM Determination of Eravacycline-Bound Structures of the Ribosome and the Multidrug Efflux Pump AdeJ of Acinetobacter baumannii mBio
7m4w March 22, 2021 Zhang Zhemin, Morgan Christopher E., Bonomo Robert A., Yu Edward W.. 2021. Cryo-EM Determination of Eravacycline-Bound Structures of the Ribosome and the Multidrug Efflux Pump AdeJ of Acinetobacter baumannii mBio
7m4x March 22, 2021 Zhang Zhemin, Morgan Christopher E., Bonomo Robert A., Yu Edward W.. 2021. Cryo-EM Determination of Eravacycline-Bound Structures of the Ribosome and the Multidrug Efflux Pump AdeJ of Acinetobacter baumannii mBio
7m4x March 22, 2021 Zhang Zhemin, Morgan Christopher E., Bonomo Robert A., Yu Edward W.. 2021. Cryo-EM Determination of Eravacycline-Bound Structures of the Ribosome and the Multidrug Efflux Pump AdeJ of Acinetobacter baumannii mBio
7m4x March 22, 2021 Zhang Zhemin, Morgan Christopher E., Bonomo Robert A., Yu Edward W.. 2021. Cryo-EM Determination of Eravacycline-Bound Structures of the Ribosome and the Multidrug Efflux Pump AdeJ of Acinetobacter baumannii mBio
7m4y March 22, 2021 Zhang Zhemin, Morgan Christopher E., Bonomo Robert A., Yu Edward W.. 2021. Cryo-EM Determination of Eravacycline-Bound Structures of the Ribosome and the Multidrug Efflux Pump AdeJ of Acinetobacter baumannii mBio
7m4y March 22, 2021 Zhang Zhemin, Morgan Christopher E., Bonomo Robert A., Yu Edward W.. 2021. Cryo-EM Determination of Eravacycline-Bound Structures of the Ribosome and the Multidrug Efflux Pump AdeJ of Acinetobacter baumannii mBio
7m4y March 22, 2021 Zhang Zhemin, Morgan Christopher E., Bonomo Robert A., Yu Edward W.. 2021. Cryo-EM Determination of Eravacycline-Bound Structures of the Ribosome and the Multidrug Efflux Pump AdeJ of Acinetobacter baumannii mBio
7m4z March 22, 2021 Zhang Zhemin, Morgan Christopher E., Bonomo Robert A., Yu Edward W.. 2021. Cryo-EM Determination of Eravacycline-Bound Structures of the Ribosome and the Multidrug Efflux Pump AdeJ of Acinetobacter baumannii mBio
7m4z March 22, 2021 Zhang Zhemin, Morgan Christopher E., Bonomo Robert A., Yu Edward W.. 2021. Cryo-EM Determination of Eravacycline-Bound Structures of the Ribosome and the Multidrug Efflux Pump AdeJ of Acinetobacter baumannii mBio
8cf8 Feb. 3, 2023 Paternoga Helge, Crowe-McAuliffe Caillan, Bock Lars V., Koller Timm O., Morici Martino, Beckert Bertrand, Myasnikov Alexander G., Grubmüller Helmut, Nováček Jiří, Wilson Daniel N.. 2023. Structural conservation of antibiotic interaction with ribosomes Nature Structural & Molecular Biology

Physicochemical filters

Descriptor Lipinski's RO5 Veber Pfizer's 3/75
Compliance
MW 558.21 g/mol
HBA 10
HBD 6
HBA + HBD
AlogP 0.14
TPSA 193.73
RB 5

Radar chart