Complex 7k00
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 1.98 |
| System mass | 2209.99 kDa |
| Deposition year | 2020 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Escherichia |
| RCSB PDB Entry | 7k00 |
| Reference | Watson Zoe L, Ward Fred R, Méheust Raphaël, Ad Omer, Schepartz Alanna, Banfield Jillian F, Cate Jamie HD. 2020. Structure of the bacterial ribosome at 2 Å resolution eLife |
| Equivalence Class |
NR_all_83717.187,
NR_all_56726.172
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | PAR |
| Residue | . / 1601 |
| Chain | EB / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 263.77 Å3 |
| Hydrophobicity | 0.122 |
| Hydrophilicity | 0.976 |
| Buriedness | 0.684 |
| Don/acc character | 2.155 |
| SiteScore | 0.852 |
| D Score | 0.838 |
| Kd | — |
| Compound | SPM |
| Residue | . / 6223 |
| Chain | KN / a |
| Non-redundant | True |
| Interacting RNA chains | V/a |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | V/a: rRNA |
| RNA family global | rRNA |
| Volume | 280.92 Å3 |
| Hydrophobicity | 0.213 |
| Hydrophilicity | 1.141 |
| Buriedness | 0.742 |
| Don/acc character | 1.223 |
| SiteScore | 0.995 |
| D Score | 0.777 |
| Kd | — |