HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 7k00

System information

Experimental technique Electron Microscopy
Experimental resolution 1.98
System mass 2209.99 kDa
Deposition year 2020
Molecule type RNA/Protein
# RNA entities 1
Organism Escherichia
RCSB PDB Entry 7k00
Reference Watson Zoe L, Ward Fred R, Méheust Raphaël, Ad Omer, Schepartz Alanna, Banfield Jillian F, Cate Jamie HD. . Structure of the bacterial ribosome at 2 Å resolution eLife
Equivalence Class NR_all_83717.186, NR_all_56726.171
BGSU version: 4.49

Compound PAR
Residue . / 1601
Chain EB / A
Non-redundant True
Interacting RNA chains A/A
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains A/A: rRNA
RNA family global rRNA
Volume 263.77 Å3
Hydrophobicity 0.122
Hydrophilicity 0.976
Buriedness 0.684
Don/acc character 2.155
SiteScore 0.852
D Score 0.838
Kd

Compound SPM
Residue . / 6223
Chain KN / a
Non-redundant True
Interacting RNA chains V/a
RNA environment detailled RNA-only
RNA environment global RNA
RNA family chains V/a: rRNA
RNA family global rRNA
Volume 280.92 Å3
Hydrophobicity 0.213
Hydrophilicity 1.141
Buriedness 0.742
Don/acc character 1.223
SiteScore 0.995
D Score 0.777
Kd