HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 7mdz

System information

Experimental technique Electron Microscopy
Experimental resolution 3.20
System mass 3363.84 kDa
Deposition year 2021
Molecule type RNA/Protein
# RNA entities 1
Organism Oryctolagus
RCSB PDB Entry 7mdz
Reference Koga Yumi, Hoang Eileen M., Park Yongho, Keszei Alexander F.A., Murray Jason, Shao Sichen, Liau Brian B.. . Discovery of C13-Aminobenzoyl Cycloheximide Derivatives that Potently Inhibit Translation Elongation Journal of the American Chemical Society
Equivalence Class NR_all_06650.50
BGSU version: 4.48

Compound Z2V
Residue . / 5288
Chain WJ / 5
Non-redundant True
Interacting RNA chains XB/5
RNA environment detailled protein, ion
RNA environment global RNA/Protein
RNA family chains XB/5: rRNA
RNA family global rRNA
Volume 700.41 Å3
Hydrophobicity 0.241
Hydrophilicity 1.359
Buriedness 0.780
Don/acc character 0.767
SiteScore 1.055
D Score 0.965
Kd