HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 7k98

System information

Experimental technique X-ray
Experimental resolution 2.19
System mass 305.78 kDa
Deposition year 2020
Molecule type RNA/Protein
# RNA entities 1
Organism Mycobacterium
RCSB PDB Entry 7k98
Reference Michalska Karolina, Jedrzejczak Robert, Wower Jacek, Chang Changsoo, Baragaña Beatriz, Gilbert Ian H, Forte Barbara, Joachimiak Andrzej. . Mycobacterium tuberculosis Phe-tRNA synthetase: structural insights into tRNA recognition and aminoacylation Nucleic Acids Research
Equivalence Class NR_all_55755.2
BGSU version: 4.48

Compound W5Y
Residue . / 401
Chain G / A
Non-redundant True
Interacting RNA chains E/C
RNA environment detailled protein, ion
RNA environment global RNA/Protein
RNA family chains E/C: tRNA
RNA family global tRNA
Volume 507.30 Å3
Hydrophobicity 0.966
Hydrophilicity 1.531
Buriedness 0.838
Don/acc character 0.519
SiteScore 1.093
D Score 0.943
Kd

Compound W5Y
Residue . / 401
Chain O / D
Non-redundant True
Interacting RNA chains F/F
RNA environment detailled protein, ion
RNA environment global RNA/Protein
RNA family chains F/F: tRNA
RNA family global tRNA
Volume 376.27 Å3
Hydrophobicity 1.173
Hydrophilicity 1.140
Buriedness 0.847
Don/acc character 0.511
SiteScore 1.100
D Score 1.077
Kd