Complex 7b5k
Legend
Pocket colors by molecule type
RNA
Protein
DNA
These colors appear when a pocket is selected (the structure fades to show the pocket surface). Colors from the molecule-type palette (RNA / protein / DNA).
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.90 |
| System mass | 2196.77 kDa |
| Deposition year | 2020 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Escherichia |
| RCSB PDB Entry | 7b5k |
| Equivalence Class |
NR_all_83717.187,
NR_all_56726.172,
NR_all_20230.1
BGSU version: 4.52 |
Pockets List
Legend
Cell colors for SiteScore and D Score:
Favourable
Intermediate
Unfavourable
Not available
| Score | Threshold | Meaning |
|---|---|---|
| SiteScore | < 0.8 | Non-drug binding site |
| SiteScore | 0.8 – 1.0 | Potential drug binding site |
| SiteScore | > 1.0 | Promising binding site |
| D Score | < 0.83 | Undruggable |
| D Score | 0.83 – 0.98 | Difficult |
| D Score | > 0.98 | Druggable |
Tick a pocket below to highlight it in the 3D structure above.
| Compound | ERY |
| Residue | . / 3237 |
| Chain | HK / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/A: rRNA |
| RNA family global | rRNA |
| Volume | 557.03 Å3 |
| Hydrophobicity | 0.864 |
| Hydrophilicity | 1.284 |
| Buriedness | 0.832 |
| Don/acc character | 0.753 |
| SiteScore | 1.086 |
| D Score | 1.016 |
| Kd | — |
| Compound | SY5 |
| Residue | . / 1714 |
| Chain | YO / a |
| Non-redundant | True |
| Interacting RNA chains | CB/z, FA/a |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | CB/z: tRNA, FA/a: rRNA |
| RNA family global | multiple |
| Volume | 770.04 Å3 |
| Hydrophobicity | 0.210 |
| Hydrophilicity | 1.093 |
| Buriedness | 0.727 |
| Don/acc character | 3.050 |
| SiteScore | 1.170 |
| D Score | 1.020 |
| Kd | — |
| Compound | SY5 |
| Residue | . / 1715 |
| Chain | ZO / a |
| Non-redundant | True |
| Interacting RNA chains | FA/a |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | FA/a: rRNA |
| RNA family global | rRNA |
| Volume | 141.66 Å3 |
| Hydrophobicity | 0.068 |
| Hydrophilicity | 1.261 |
| Buriedness | 0.653 |
| Don/acc character | 3.919 |
| SiteScore | 0.781 |
| D Score | 0.487 |
| Kd | — |