Harnessing RIBOnucleic acid - Small molecules Structures
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A new fluorescent RNA aptamer bound with N, manganese soak
SM: NI4 NI4
Crystal structure of NAD-II riboswitch (two strands) with NMN at 1.67 angstrom
SM: NMN NMN
Interaction between a fluoroquinolone derivative KG022 and RNAs: effect of base pairs 3' adjacent to the bulge out residues
SM: 53D
The Tet-S1 state of G264A mutated Tetrahymena group I intron with 6nt 3'/5'-exon and 2-aminopurine nucleoside
SM: OJI
Dibekacin-bound E.coli 70S ribosome in the PURE system
SM: 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D SPM
Arbekacin-bound E.coli 70S ribosome in the PURE system
SM: 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G SPM
Dibekacin-added human 80S ribosome
SM: 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D 84D
Arbekacin-added human 80S ribosome
SM: 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G 84G
Crystal structure of RhoBAST complexed with TMR-DN
SM: V8C V8C V8C
Cryo-EM structure of the human 55S mitoribosome with Tigecycline
SM: T1C T1C T1C T1C
Cryo-EM structure of the human 39S mitoribosome with Tigecycline
SM: T1C
Cryo-EM structure of the human 80S ribosome with Tigecycline
SM: T1C T1C T1C T1C T1C T1C T1C T1C T1C
Cryo-EM structure of the yeast 80S ribosome with tigecycline, eEF2, Stm1 and eIF5A
SM: GDP T1C T1C T1C T1C T1C T1C
Crystal structure of Broccoli aptamer with DFHBI-1T
SM: 2ZY
Cryo-EM structure of the yeast 80S ribosome with tigecycline, Not5 and P-site tRNA
SM: T1C T1C T1C T1C T1C T1C
Crystal structure of Red Broccoli aptamer with OBI
SM: A1EBI A1EBI
Crystal structure of 2'-dG-III riboswitch with 2'-dG
SM: GNG
Crystal structure of 2'-dG-III riboswitch with guanosine
SM: GMP GMP
Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (250uM)
SM: 3K5 3K5 PAR PAR PAR PAR PAR PAR PAR PAR
Structure of Candida albicans 80S ribosome in complex with mefloquine
SM: SPK YMZ YMZ
Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (500umol)
SM: 3K5 3K5 PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR
Crystal structure of the Candida albicans 80S ribosome in complex with Paromomycin (2mM)
SM: 3K5 PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR PAR
Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane with a tRNA in pe/E chimeric state
SM: WUX
Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid with a tRNA in pe/E chimeric state
SM: FUA
Ternary complex of translating ribosome, NAC and METAP1
SM: SPM SPM SPM
Structural insights into human co-transcriptional capping - structure 6
SM: SAM
55S mammalian mitochondrial ribosome with mtRF1 and P-site tRNA
SM: SPM
28S mammalian mitochondrial small ribosomal subunit with mtRF1 and P-site tRNA
Monkeypox virus VP39 in complex with SAH and cap0
SM: SAH
Crystal structure of the Candida albicans 80S ribosome in complex with geneticin G418 (rotated state)
SM: 3K5 3K5 GET GET
Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and intronistat B
SM: EPE EPE SPM SPM VTE
Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+ and ARN25850
SM: EPE EPE SPM VTR
Structure of Oceanobacillus iheyensis group II intron post first step of splicing in the presence of K+, Mg2+ and intronistat B
SM: EPE EPE EPE SPM SPM
Structure of Oceanobacillus iheyensis group II intron in the presence of K+, Mg2+, 5'-exon, and intronistat B after 2h30 soaking
SM: EPE SPM VTE
Structure of Oceanobacillus iheyensis group II intron in the presence of Na+, Mg2+ and intronistat B
SM: GDE
Structure of human terminal uridylyltransferase 7 (hTUT7/ZCCHC6) bound with pre-let7g miRNA and UTPalphaS
SM: P5E
E167K RF2 on E. coli 70S release complex with UGG (Structure I)
E167K RF2 on E. coli 70S release complex with UGG (Structure II)
E167K RF2 on E. coli 70S release complex with UGG (Structure III)
Staphylococcus aureus 70S ribosome with elongation factor G locked with fusidic acid cyclopentane in post-translocational state
Mycoplasma pneumoniae large ribosomal subunit in chloramphenicol-treated cells
SM: CLM SPM SPM SPM SPM
Yeast 60S ribosomal subunit, RPL39 deletion
Mouse RPL39 integrated into the yeast 60S ribosomal subunit
Yeast 60S ribosomal subunit
Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (leading 70S)
SM: CLM
Mycoplasma pneumoniae di-ribosome in chloramphenicol-treated cells (following 70S)
80S yeast ribosome in complex with Methyllissoclimide
SM: XBI XBI
Escherichia coli paused disome complex (queueing 70S non-rotated closed PRE state)
SM: ATP ATP
Structure of the CNOT3-bound human 80S ribosome with tRNA-ARG in the P-site.
SM: B3P
Mouse RPL39L integrated into the yeast 60S ribosomal subunit
80S yeast ribosome in complex with Bromolissoclimide
SM: ZWB ZWB
Influenza A/H7N9 polymerase in elongation state with continuous Pol II pS5 CTD peptide mimic bound in site 1A/2A
SM: 2KH
Tilapia Lake Virus polymerase in vRNA elongation state (transcriptase conformation)
SM: A0I
Tilapia Lake Virus polymerase in vRNA elongation state with additional mode B promoter (transcriptase conformation)
Chaetomium thermophilum pre-60S State 6 - pre-5S rotation - L1 intermediate - composite structure
SM: GTP
Chaetomium thermophilum pre-60S State 10 - pre-5S rotation with Ytm1-Erb1
mt-SSU in GTPBP8 knock-out cells, state 4
SM: NAD SPM SRY
Current selection range: to
Filter entries " Experimental resolution " between the two values. Global DB range: 0.6 – 11.2
Filter entries " Molecular weight (compound) " between the two values. Global DB range: 150 – 1000
Filter entries " Deposition date " between the two values. Global DB range: 1986 – 2027
Filter entries " Molecular weight (complex) " between the two values. Global DB range: 0 – 13090
Filter entries " Number of atoms " between the two values. Global DB range: 5 – 70
Filter entries " Number of interacting chains " between the two values. Global DB range: 1 – 4
Filter entries " Pocket size " between the two values. Global DB range: 15.9 – 394.0
Filter entries " SiteScore " between the two values. Global DB range: 0.3 – 1.3
Filter entries " Dscore " between the two values. Global DB range: -0.1 – 1.4
Filter entries " Exposure " between the two values. Global DB range: 0.1 – 1.0
Filter entries " Enclosure " between the two values. Global DB range: 0.3 – 1.0
Filter entries " Hydrophobicity " between the two values. Global DB range: 0.0 – 3.1
Filter entries " Hydrophilicity " between the two values. Global DB range: 0.2 – 2.8
Filter entries " Donor/Acceptor " between the two values. Global DB range: 0.0 – 5.0
Filter entries " Volume " between the two values. Global DB range: 21.2 – 1528.8