HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Compound 2KH

Identifiers

  • Canonical SMILES: 
    O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(=O)N[P](O)(=O)O[P](O)(O)=O)N2C=CC(=O)NC2=O
  • IUPAC name: 
    5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]uridine
  • InChi: 
    InChI=1S/C9H16N3O14P3/c13-5-1-2-12(9(16)10-5)8-7(15)6(14)4(25-8)3-24-27(17,18)11-28(19,20)26-29(21,22)23/h1-2,4,6-8,14-15H,3H2,(H,10,13,16)(H2,21,22,23)(H3,11,17,18,19,20)/t4-,6-,7-,8-/m1/s1
  • InChiKey: 
    OZIBFYOFLVBDIY-XVFCMESISA-N

Chemistry rules

Lipinski's RO5 Veber Pfizer's 3/75

External links

72201022

RNA-SM complexes

PDB code Deposition date Reference publication
5w51 June 13, 2017 Wang Wei, Xu Liang, Hu Lulu, Chong Jenny, He Chuan, Wang Dong. . Epigenetic DNA Modification N6-Methyladenine Causes Site-Specific RNA Polymerase II Transcriptional Pausing Journal of the American Chemical Society
6szv Oct. 2, 2019 Wandzik Joanna M., Kouba Tomas, Karuppasamy Manikandan, Pflug Alexander, Drncova Petra, Provaznik Jan, Azevedo Nayara, Cusack Stephen. . A Structure-Based Model for the Complete Transcription Cycle of Influenza Polymerase Cell
6t0v Oct. 3, 2019 Wandzik Joanna M., Kouba Tomas, Karuppasamy Manikandan, Pflug Alexander, Drncova Petra, Provaznik Jan, Azevedo Nayara, Cusack Stephen. . A Structure-Based Model for the Complete Transcription Cycle of Influenza Polymerase Cell
7ojn May 16, 2021 Kouba Tomas, Vogel Dominik, Thorkelsson Sigurdur R., Quemin Emmanuelle R. J., Williams Harry M., Milewski Morlin, Busch Carola, Günther Stephan, Grünewald Kay, Rosenthal Maria, Cusack Stephen. . Conformational changes in Lassa virus L protein associated with promoter binding and RNA synthesis activity Nature Communications
7om7 May 21, 2021 Ferrero Diego S., Falqui Michela, Verdaguer Nuria. . Snapshots of a Non-Canonical RdRP in Action Viruses
7om7 May 21, 2021 Ferrero Diego S., Falqui Michela, Verdaguer Nuria. . Snapshots of a Non-Canonical RdRP in Action Viruses
8as7 Aug. 18, 2022 Williams Harry M, Thorkelsson Sigurdur R, Vogel Dominik, Milewski Morlin, Busch Carola, Cusack Stephen, Grünewald Kay, Quemin Emmanuelle R J, Rosenthal Maria. . Structural insights into viral genome replication by the severe fever with thrombocytopenia syndrome virus L protein Nucleic Acids Research
8asb Aug. 18, 2022 Williams Harry M, Thorkelsson Sigurdur R, Vogel Dominik, Milewski Morlin, Busch Carola, Cusack Stephen, Grünewald Kay, Quemin Emmanuelle R J, Rosenthal Maria. . Structural insights into viral genome replication by the severe fever with thrombocytopenia syndrome virus L protein Nucleic Acids Research
8asd Aug. 19, 2022 Williams Harry M, Thorkelsson Sigurdur R, Vogel Dominik, Milewski Morlin, Busch Carola, Cusack Stephen, Grünewald Kay, Quemin Emmanuelle R J, Rosenthal Maria. . Structural insights into viral genome replication by the severe fever with thrombocytopenia syndrome virus L protein Nucleic Acids Research
8pnq June 30, 2023 Krischuns Tim, Arragain Benoît, Isel Catherine, Paisant Sylvain, Budt Matthias, Wolff Thorsten, Cusack Stephen, Naffakh Nadia. . The host RNA polymerase II C-terminal domain is the anchor for replication of the influenza virus genome Nature Communications
8r6y Nov. 23, 2023 Williams Harry M, Thorkelsson Sigurdur R, Vogel Dominik, Busch Carola, Milewski Morlin, Cusack Stephen, Grünewald Kay, Quemin Emmanuelle R J, Rosenthal Maria. . Structural snapshots of phenuivirus cap-snatching and transcription Nucleic Acids Research
9xe6 Oct. 27, 2025
9xe7 Oct. 27, 2025
9xe9 Oct. 27, 2025
9xec Oct. 27, 2025

Physicochemical filters

Descriptor Lipinski's RO5 Veber Pfizer's 3/75
Compliance
MW 483.16 g/mol
HBA not available
HBD not available
HBA + HBD
AlogP not available
TPSA not available
RB not available

Radar chart