HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8k2b

System information

Experimental technique Electron Microscopy
Experimental resolution 3.40
System mass 1796.20 kDa
Deposition year 2023
Molecule type RNA/Protein
# RNA entities 1
Organism Homo
RCSB PDB Entry 8k2b
Reference Li Xiang, Wang Mengjiao, Denk Timo, Buschauer Robert, Li Yi, Beckmann Roland, Cheng Jingdong. . Structural basis for differential inhibition of eukaryotic ribosomes by tigecycline Nature Communications
Equivalence Class NR_all_12763.36
BGSU version: 4.49

Compound T1C
Residue . / 1692
Chain QE / L1
Non-redundant True
Interacting RNA chains A/L1
RNA environment detailled ion
RNA environment global RNA
RNA family chains A/L1: rRNA
RNA family global rRNA
Volume 276.12 Å3
Hydrophobicity 0.251
Hydrophilicity 0.888
Buriedness 0.690
Don/acc character 3.432
SiteScore 1.101
D Score 0.970
Kd