Complex 8oeq
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.30 |
| System mass | 6327.53 kDa |
| Deposition year | 2023 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Candida |
| RCSB PDB Entry | 8oeq |
| Reference | Kolosova Olga, Zgadzay Yury, Stetsenko Artem, Sukhinina Anastasia P., Atamas Anastasia, Validov Shamil, Rogachev Andrey, Usachev Konstantin, Jenner Lasse, Dmitriev Sergey E., Yusupova Gulnara, Guskov Albert, Yusupov Marat. . Mechanism of read-through enhancement by aminoglycosides and mefloquine Proceedings of the National Academy of Sciences |
| Equivalence Class |
NR_all_22526.9,
NR_all_58155.3
BGSU version: 4.49 |
| Compound | 3K5 |
| Residue | . / 3406 |
| Chain | JF / 1 |
| Non-redundant | True |
| Interacting RNA chains | A/1 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/1: rRNA |
| RNA family global | rRNA |
| Volume | 562.86 Å3 |
| Hydrophobicity | 0.207 |
| Hydrophilicity | 1.141 |
| Buriedness | 0.765 |
| Don/acc character | 1.326 |
| SiteScore | 1.195 |
| D Score | 1.027 |
| Kd | — |
| Compound | 3K5 |
| Residue | . / 202 |
| Chain | HDB / CJ |
| Non-redundant | True |
| Interacting RNA chains | BC/AS |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | BC/AS: rRNA |
| RNA family global | rRNA |
| Volume | 568.01 Å3 |
| Hydrophobicity | 0.404 |
| Hydrophilicity | 1.048 |
| Buriedness | 0.776 |
| Don/acc character | 1.024 |
| SiteScore | 1.052 |
| D Score | 1.064 |
| Kd | — |
| Compound | PAR |
| Residue | . / 3967 |
| Chain | YAA / 1 |
| Non-redundant | True |
| Interacting RNA chains | A/1 |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | A/1: rRNA |
| RNA family global | rRNA |
| Volume | 579.67 Å3 |
| Hydrophobicity | 0.102 |
| Hydrophilicity | 1.624 |
| Buriedness | 0.728 |
| Don/acc character | 1.001 |
| SiteScore | 1.170 |
| D Score | 0.847 |
| Kd | — |
| Compound | PAR |
| Residue | . / 3968 |
| Chain | ZAA / 1 |
| Non-redundant | True |
| Interacting RNA chains | A/1 |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | A/1: rRNA |
| RNA family global | rRNA |
| Volume | 135.49 Å3 |
| Hydrophobicity | 0.016 |
| Hydrophilicity | 0.707 |
| Buriedness | 0.459 |
| Don/acc character | 4.540 |
| SiteScore | 1.054 |
| D Score | 0.985 |
| Kd | — |
| Compound | PAR |
| Residue | . / 3969 |
| Chain | ABA / 1 |
| Non-redundant | True |
| Interacting RNA chains | TA/B, A/1 |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | A/1: rRNA, TA/B: rRNA |
| RNA family global | rRNA |
| Volume | 327.57 Å3 |
| Hydrophobicity | 0.100 |
| Hydrophilicity | 1.149 |
| Buriedness | 0.677 |
| Don/acc character | 1.127 |
| SiteScore | 0.811 |
| D Score | 0.748 |
| Kd | — |
| Compound | PAR |
| Residue | . / 1970 |
| Chain | JLA / B |
| Non-redundant | True |
| Interacting RNA chains | TA/B |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | TA/B: rRNA |
| RNA family global | rRNA |
| Volume | 245.59 Å3 |
| Hydrophobicity | 0.118 |
| Hydrophilicity | 1.230 |
| Buriedness | 0.868 |
| Don/acc character | 1.251 |
| SiteScore | 0.790 |
| D Score | 0.626 |
| Kd | — |
| Compound | PAR |
| Residue | . / 3788 |
| Chain | CBB / AS |
| Non-redundant | True |
| Interacting RNA chains | BC/AS |
| RNA environment detailled | protein, ion |
| RNA environment global | RNA/Protein |
| RNA family chains | BC/AS: rRNA |
| RNA family global | rRNA |
| Volume | 573.50 Å3 |
| Hydrophobicity | 0.193 |
| Hydrophilicity | 1.380 |
| Buriedness | 0.749 |
| Don/acc character | 1.292 |
| SiteScore | 1.034 |
| D Score | 0.940 |
| Kd | — |
| Compound | PAR |
| Residue | . / 3789 |
| Chain | DBB / AS |
| Non-redundant | True |
| Interacting RNA chains | BC/AS |
| RNA environment detailled | protein |
| RNA environment global | RNA/Protein |
| RNA family chains | BC/AS: rRNA |
| RNA family global | rRNA |
| Volume | 522.73 Å3 |
| Hydrophobicity | 0.204 |
| Hydrophilicity | 1.005 |
| Buriedness | 0.685 |
| Don/acc character | 2.343 |
| SiteScore | 0.925 |
| D Score | 0.929 |
| Kd | — |
| Compound | PAR |
| Residue | . / 3790 |
| Chain | EBB / AS |
| Non-redundant | True |
| Interacting RNA chains | BC/AS |
| RNA environment detailled | RNA-only |
| RNA environment global | RNA |
| RNA family chains | BC/AS: rRNA |
| RNA family global | rRNA |
| Volume | - |
| Hydrophobicity | - |
| Hydrophilicity | - |
| Buriedness | - |
| Don/acc character | - |
| SiteScore | - |
| D Score | - |
| Kd | — |
| Compound | PAR |
| Residue | . / 1946 |
| Chain | AJB / CM |
| Non-redundant | True |
| Interacting RNA chains | TD/CM |
| RNA environment detailled | ion |
| RNA environment global | RNA |
| RNA family chains | TD/CM: rRNA |
| RNA family global | rRNA |
| Volume | 704.87 Å3 |
| Hydrophobicity | 0.089 |
| Hydrophilicity | 1.023 |
| Buriedness | 0.683 |
| Don/acc character | 3.339 |
| SiteScore | 1.143 |
| D Score | 1.016 |
| Kd | — |