Complex 8ifc
System information
Experimental technique | Electron Microscopy |
Experimental resolution | 2.90 |
System mass | 2212.46 kDa |
Deposition year | 2023 |
Molecule type | RNA/Protein |
# RNA entities | 6 |
Organism | Escherichia |
RCSB PDB Entry | 8ifc |
Reference | Tomono Junta, Asano Kosuke, Chiashi Takuma, Suzuki Masato, Igarashi Masayuki, Takahashi Yoshiaki, Tanaka Yoshikazu, Yokoyama Takeshi. . Direct visualization of ribosomes in the cell-free system revealed the functional evolution of aminoglycoside The Journal of Biochemistry |
Compound | 84G |
Residue | . / 1791 |
Chain | LI / A |
Non-redundant | True |
Interacting RNA chains | CB/7, A/A |
Volume | 344.03 Å3 |
Hydrophobicity | 0.122 |
Hydrophilicity | 1.091 |
Buriedness | 0.656 |
Don/acc character | 2.127 |
SiteScore | 0.802 |
D Score | 0.760 |
Compound | 84G |
Residue | . / 1792 |
Chain | MI / A |
Non-redundant | True |
Interacting RNA chains | A/A |
Volume | 873.28 Å3 |
Hydrophobicity | 0.160 |
Hydrophilicity | 1.180 |
Buriedness | 0.716 |
Don/acc character | 1.729 |
SiteScore | 1.012 |
D Score | 0.985 |
Compound | 84G |
Residue | . / 1793 |
Chain | NI / A |
Non-redundant | False |
Interacting RNA chains | A/A |
Volume | 899.35 Å3 |
Hydrophobicity | 0.092 |
Hydrophilicity | 1.255 |
Buriedness | 0.730 |
Don/acc character | 2.059 |
SiteScore | 1.021 |
D Score | 0.969 |
Compound | 84G |
Residue | . / 6249 |
Chain | US / a |
Non-redundant | True |
Interacting RNA chains | V/a, BB/6 |
Volume | 668.16 Å3 |
Hydrophobicity | 0.046 |
Hydrophilicity | 1.067 |
Buriedness | 0.679 |
Don/acc character | 1.644 |
SiteScore | 0.987 |
D Score | 1.000 |
Compound | 84G |
Residue | . / 6250 |
Chain | VS / a |
Non-redundant | True |
Interacting RNA chains | V/a |
Volume | 611.57 Å3 |
Hydrophobicity | 0.113 |
Hydrophilicity | 1.023 |
Buriedness | 0.707 |
Don/acc character | 1.784 |
SiteScore | 1.009 |
D Score | 1.030 |
Compound | 84G |
Residue | . / 6252 |
Chain | XS / a |
Non-redundant | True |
Interacting RNA chains | V/a |
Volume | 76.49 Å3 |
Hydrophobicity | 0.079 |
Hydrophilicity | 1.099 |
Buriedness | 0.597 |
Don/acc character | 1.467 |
SiteScore | 0.453 |
D Score | 0.326 |
Compound | 84G |
Residue | . / 6253 |
Chain | YS / a |
Non-redundant | True |
Interacting RNA chains | V/a |
Volume | 183.85 Å3 |
Hydrophobicity | 0.085 |
Hydrophilicity | 0.859 |
Buriedness | 0.689 |
Don/acc character | 3.827 |
SiteScore | 0.615 |
D Score | 0.543 |
Compound | 84G |
Residue | . / 6254 |
Chain | ZS / a |
Non-redundant | True |
Interacting RNA chains | V/a |
Volume | 292.92 Å3 |
Hydrophobicity | 0.022 |
Hydrophilicity | 1.073 |
Buriedness | 0.676 |
Don/acc character | 2.223 |
SiteScore | 0.749 |
D Score | 0.693 |
Compound | 84G |
Residue | . / 6255 |
Chain | AT / a |
Non-redundant | True |
Interacting RNA chains | V/a |
Volume | 813.94 Å3 |
Hydrophobicity | 0.148 |
Hydrophilicity | 1.075 |
Buriedness | 0.689 |
Don/acc character | 2.132 |
SiteScore | 0.994 |
D Score | 1.003 |
Compound | SPM |
Residue | . / 6204 |
Chain | BR / a |
Non-redundant | False |
Interacting RNA chains | V/a |
Volume | 297.38 Å3 |
Hydrophobicity | 0.146 |
Hydrophilicity | 1.240 |
Buriedness | 0.741 |
Don/acc character | 0.963 |
SiteScore | 0.926 |
D Score | 0.849 |