Complex 8ifc
System information
| Experimental technique | Electron Microscopy |
| Experimental resolution | 2.90 |
| System mass | 2212.46 kDa |
| Deposition year | 2023 |
| Molecule type | RNA/Protein |
| # RNA entities | 6 |
| Organism | Escherichia |
| RCSB PDB Entry | 8ifc |
| Reference | Tomono Junta, Asano Kosuke, Chiashi Takuma, Suzuki Masato, Igarashi Masayuki, Takahashi Yoshiaki, Tanaka Yoshikazu, Yokoyama Takeshi. . Direct visualization of ribosomes in the cell-free system revealed the functional evolution of aminoglycoside The Journal of Biochemistry |
| Compound | 84G |
| Residue | . / 1791 |
| Chain | LI / A |
| Non-redundant | True |
| Interacting RNA chains | CB/7, A/A |
| Volume | 344.03 Å3 |
| Hydrophobicity | 0.122 |
| Hydrophilicity | 1.091 |
| Buriedness | 0.656 |
| Don/acc character | 2.127 |
| SiteScore | 0.802 |
| D Score | 0.760 |
| Compound | 84G |
| Residue | . / 1792 |
| Chain | MI / A |
| Non-redundant | True |
| Interacting RNA chains | A/A |
| Volume | 873.28 Å3 |
| Hydrophobicity | 0.160 |
| Hydrophilicity | 1.180 |
| Buriedness | 0.716 |
| Don/acc character | 1.729 |
| SiteScore | 1.012 |
| D Score | 0.985 |
| Compound | 84G |
| Residue | . / 1793 |
| Chain | NI / A |
| Non-redundant | False |
| Interacting RNA chains | A/A |
| Volume | 899.35 Å3 |
| Hydrophobicity | 0.092 |
| Hydrophilicity | 1.255 |
| Buriedness | 0.730 |
| Don/acc character | 2.059 |
| SiteScore | 1.021 |
| D Score | 0.969 |
| Compound | 84G |
| Residue | . / 6249 |
| Chain | US / a |
| Non-redundant | True |
| Interacting RNA chains | V/a, BB/6 |
| Volume | 668.16 Å3 |
| Hydrophobicity | 0.046 |
| Hydrophilicity | 1.067 |
| Buriedness | 0.679 |
| Don/acc character | 1.644 |
| SiteScore | 0.987 |
| D Score | 1.000 |
| Compound | 84G |
| Residue | . / 6250 |
| Chain | VS / a |
| Non-redundant | True |
| Interacting RNA chains | V/a |
| Volume | 611.57 Å3 |
| Hydrophobicity | 0.113 |
| Hydrophilicity | 1.023 |
| Buriedness | 0.707 |
| Don/acc character | 1.784 |
| SiteScore | 1.009 |
| D Score | 1.030 |
| Compound | 84G |
| Residue | . / 6252 |
| Chain | XS / a |
| Non-redundant | True |
| Interacting RNA chains | V/a |
| Volume | 76.49 Å3 |
| Hydrophobicity | 0.079 |
| Hydrophilicity | 1.099 |
| Buriedness | 0.597 |
| Don/acc character | 1.467 |
| SiteScore | 0.453 |
| D Score | 0.326 |
| Compound | 84G |
| Residue | . / 6253 |
| Chain | YS / a |
| Non-redundant | True |
| Interacting RNA chains | V/a |
| Volume | 183.85 Å3 |
| Hydrophobicity | 0.085 |
| Hydrophilicity | 0.859 |
| Buriedness | 0.689 |
| Don/acc character | 3.827 |
| SiteScore | 0.615 |
| D Score | 0.543 |
| Compound | 84G |
| Residue | . / 6254 |
| Chain | ZS / a |
| Non-redundant | True |
| Interacting RNA chains | V/a |
| Volume | 292.92 Å3 |
| Hydrophobicity | 0.022 |
| Hydrophilicity | 1.073 |
| Buriedness | 0.676 |
| Don/acc character | 2.223 |
| SiteScore | 0.749 |
| D Score | 0.693 |
| Compound | 84G |
| Residue | . / 6255 |
| Chain | AT / a |
| Non-redundant | True |
| Interacting RNA chains | V/a |
| Volume | 813.94 Å3 |
| Hydrophobicity | 0.148 |
| Hydrophilicity | 1.075 |
| Buriedness | 0.689 |
| Don/acc character | 2.132 |
| SiteScore | 0.994 |
| D Score | 1.003 |
| Compound | SPM |
| Residue | . / 6204 |
| Chain | BR / a |
| Non-redundant | False |
| Interacting RNA chains | V/a |
| Volume | 297.38 Å3 |
| Hydrophobicity | 0.146 |
| Hydrophilicity | 1.240 |
| Buriedness | 0.741 |
| Don/acc character | 0.963 |
| SiteScore | 0.926 |
| D Score | 0.849 |