HARIBOSS

Harnessing RIBOnucleic acid - Small molecules Structures

Complex 8ifc

System information

Experimental technique Electron Microscopy
Experimental resolution 2.90
System mass 2212.46 kDa
Deposition year 2023
Molecule type RNA/Protein
# RNA entities 6
Organism Escherichia
RCSB PDB Entry 8ifc
Reference Tomono Junta, Asano Kosuke, Chiashi Takuma, Suzuki Masato, Igarashi Masayuki, Takahashi Yoshiaki, Tanaka Yoshikazu, Yokoyama Takeshi. . Direct visualization of ribosomes in the cell-free system revealed the functional evolution of aminoglycoside The Journal of Biochemistry

Compound 84G
Residue . / 1791
Chain LI / A
Non-redundant True
Interacting RNA chains A/A, CB/7
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound 84G
Residue . / 1792
Chain MI / A
Non-redundant False
Interacting RNA chains A/A
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound 84G
Residue . / 1793
Chain NI / A
Non-redundant True
Interacting RNA chains A/A
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound 84G
Residue . / 6249
Chain US / a
Non-redundant True
Interacting RNA chains BB/6, V/a
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound 84G
Residue . / 6250
Chain VS / a
Non-redundant True
Interacting RNA chains V/a
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound 84G
Residue . / 6252
Chain XS / a
Non-redundant True
Interacting RNA chains V/a
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound 84G
Residue . / 6253
Chain YS / a
Non-redundant True
Interacting RNA chains V/a
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound 84G
Residue . / 6254
Chain ZS / a
Non-redundant True
Interacting RNA chains V/a
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound 84G
Residue . / 6255
Chain AT / a
Non-redundant True
Interacting RNA chains V/a
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -

Compound SPM
Residue . / 6204
Chain BR / a
Non-redundant False
Interacting RNA chains V/a
Volume -
Hydrophobicity -
Hydrophilicity -
Buriedness -
Don/acc character -
SiteScore -
D Score -