Complex 8oh6
System information
| Experimental technique | X-ray |
| Experimental resolution | 3.35 |
| System mass | 6329.54 kDa |
| Deposition year | 2023 |
| Molecule type | RNA/Protein |
| # RNA entities | 1 |
| Organism | Candida |
| RCSB PDB Entry | 8oh6 |
| Reference | Kolosova Olga, Zgadzay Yury, Stetsenko Artem, Sukhinina Anastasia P., Atamas Anastasia, Validov Shamil, Rogachev Andrey, Usachev Konstantin, Jenner Lasse, Dmitriev Sergey E., Yusupova Gulnara, Guskov Albert, Yusupov Marat. . Mechanism of read-through enhancement by aminoglycosides and mefloquine Proceedings of the National Academy of Sciences |
| Compound | 3K5 |
| Residue | . / 3463 |
| Chain | OH / 1 |
| Non-redundant | True |
| Interacting RNA chains | A/1 |
| Volume | 321.39 Å3 |
| Hydrophobicity | 0.241 |
| Hydrophilicity | 0.926 |
| Buriedness | 0.642 |
| Don/acc character | 1.236 |
| SiteScore | 0.928 |
| D Score | 0.950 |
| Compound | 3K5 |
| Residue | . / 3405 |
| Chain | ZKA / AS |
| Non-redundant | True |
| Interacting RNA chains | BC/AS |
| Volume | 575.90 Å3 |
| Hydrophobicity | 0.385 |
| Hydrophilicity | 1.307 |
| Buriedness | 0.769 |
| Don/acc character | 0.875 |
| SiteScore | 1.047 |
| D Score | 0.975 |
| Compound | PAR |
| Residue | . / 3456 |
| Chain | HH / 1 |
| Non-redundant | True |
| Interacting RNA chains | A/1 |
| Volume | 337.17 Å3 |
| Hydrophobicity | 0.101 |
| Hydrophilicity | 1.357 |
| Buriedness | 0.785 |
| Don/acc character | 0.892 |
| SiteScore | 0.699 |
| D Score | 0.508 |
| Compound | PAR |
| Residue | . / 3457 |
| Chain | IH / 1 |
| Non-redundant | True |
| Interacting RNA chains | A/1 |
| Volume | 298.75 Å3 |
| Hydrophobicity | 0.322 |
| Hydrophilicity | 1.152 |
| Buriedness | 0.795 |
| Don/acc character | 1.887 |
| SiteScore | 1.059 |
| D Score | 0.842 |
| Compound | PAR |
| Residue | . / 3458 |
| Chain | JH / 1 |
| Non-redundant | True |
| Interacting RNA chains | A/1 |
| Volume | 642.44 Å3 |
| Hydrophobicity | 0.225 |
| Hydrophilicity | 1.089 |
| Buriedness | 0.739 |
| Don/acc character | 1.945 |
| SiteScore | 1.027 |
| D Score | 1.028 |
| Compound | PAR |
| Residue | . / 3459 |
| Chain | KH / 1 |
| Non-redundant | True |
| Interacting RNA chains | A/1 |
| Volume | 37.73 Å3 |
| Hydrophobicity | 0.005 |
| Hydrophilicity | 0.776 |
| Buriedness | 0.372 |
| Don/acc character | 1.578 |
| SiteScore | 0.983 |
| D Score | 0.910 |
| Compound | PAR |
| Residue | . / 3460 |
| Chain | LH / 1 |
| Non-redundant | True |
| Interacting RNA chains | A/1 |
| Volume | 698.69 Å3 |
| Hydrophobicity | 0.075 |
| Hydrophilicity | 1.183 |
| Buriedness | 0.681 |
| Don/acc character | 1.022 |
| SiteScore | 0.989 |
| D Score | 0.963 |
| Compound | PAR |
| Residue | . / 3461 |
| Chain | MH / 1 |
| Non-redundant | True |
| Interacting RNA chains | A/1 |
| Volume | 245.93 Å3 |
| Hydrophobicity | 0.009 |
| Hydrophilicity | 0.966 |
| Buriedness | 0.659 |
| Don/acc character | 4.967 |
| SiteScore | 0.839 |
| D Score | 0.637 |
| Compound | PAR |
| Residue | . / 3462 |
| Chain | NH / 1 |
| Non-redundant | True |
| Interacting RNA chains | A/1 |
| Volume | 95.70 Å3 |
| Hydrophobicity | 0.060 |
| Hydrophilicity | 0.748 |
| Buriedness | 0.666 |
| Don/acc character | 2.489 |
| SiteScore | 0.599 |
| D Score | 0.344 |
| Compound | PAR |
| Residue | . / 3464 |
| Chain | PH / 1 |
| Non-redundant | True |
| Interacting RNA chains | TA/B, A/1 |
| Volume | 290.86 Å3 |
| Hydrophobicity | 0.004 |
| Hydrophilicity | 1.388 |
| Buriedness | 0.754 |
| Don/acc character | 0.578 |
| SiteScore | 0.946 |
| D Score | 0.631 |
| Compound | PAR |
| Residue | . / 3465 |
| Chain | QH / 1 |
| Non-redundant | True |
| Interacting RNA chains | A/1 |
| Volume | 146.46 Å3 |
| Hydrophobicity | 0.291 |
| Hydrophilicity | 1.057 |
| Buriedness | 0.658 |
| Don/acc character | 2.037 |
| SiteScore | 0.635 |
| D Score | 0.556 |
| Compound | PAR |
| Residue | . / 3466 |
| Chain | RH / 1 |
| Non-redundant | True |
| Interacting RNA chains | A/1 |
| Volume | 431.15 Å3 |
| Hydrophobicity | 0.185 |
| Hydrophilicity | 1.185 |
| Buriedness | 0.738 |
| Don/acc character | 1.355 |
| SiteScore | 1.027 |
| D Score | 0.997 |
| Compound | PAR |
| Residue | . / 201 |
| Chain | BGA / 4 |
| Non-redundant | True |
| Interacting RNA chains | C/4, A/1 |
| Volume | 284.69 Å3 |
| Hydrophobicity | 0.192 |
| Hydrophilicity | 0.867 |
| Buriedness | 0.672 |
| Don/acc character | 1.180 |
| SiteScore | 0.827 |
| D Score | 0.818 |
| Compound | PAR |
| Residue | . / 1801 |
| Chain | MHA / B |
| Non-redundant | True |
| Interacting RNA chains | TA/B |
| Volume | 716.53 Å3 |
| Hydrophobicity | 0.058 |
| Hydrophilicity | 1.105 |
| Buriedness | 0.697 |
| Don/acc character | 2.808 |
| SiteScore | 1.149 |
| D Score | 0.998 |
| Compound | PAR |
| Residue | . / 1802 |
| Chain | NHA / B |
| Non-redundant | True |
| Interacting RNA chains | TA/B |
| Volume | 368.73 Å3 |
| Hydrophobicity | 0.087 |
| Hydrophilicity | 0.900 |
| Buriedness | 0.713 |
| Don/acc character | 2.689 |
| SiteScore | 0.940 |
| D Score | 0.758 |
| Compound | PAR |
| Residue | . / 1803 |
| Chain | OHA / B |
| Non-redundant | True |
| Interacting RNA chains | TA/B, A/1 |
| Volume | 267.20 Å3 |
| Hydrophobicity | 0.362 |
| Hydrophilicity | 1.136 |
| Buriedness | 0.682 |
| Don/acc character | 1.479 |
| SiteScore | 1.094 |
| D Score | 0.921 |
| Compound | PAR |
| Residue | . / 3401 |
| Chain | VKA / AS |
| Non-redundant | True |
| Interacting RNA chains | BC/AS |
| Volume | 766.26 Å3 |
| Hydrophobicity | 0.176 |
| Hydrophilicity | 1.034 |
| Buriedness | 0.723 |
| Don/acc character | 1.676 |
| SiteScore | 1.018 |
| D Score | 1.037 |
| Compound | PAR |
| Residue | . / 3402 |
| Chain | WKA / AS |
| Non-redundant | True |
| Interacting RNA chains | BC/AS |
| Volume | 700.06 Å3 |
| Hydrophobicity | 0.077 |
| Hydrophilicity | 1.124 |
| Buriedness | 0.669 |
| Don/acc character | 1.707 |
| SiteScore | 0.981 |
| D Score | 0.975 |
| Compound | PAR |
| Residue | . / 3403 |
| Chain | XKA / AS |
| Non-redundant | True |
| Interacting RNA chains | BC/AS |
| Volume | 159.84 Å3 |
| Hydrophobicity | 0.015 |
| Hydrophilicity | 0.727 |
| Buriedness | 0.458 |
| Don/acc character | 4.633 |
| SiteScore | 1.050 |
| D Score | 0.978 |
| Compound | PAR |
| Residue | . / 3404 |
| Chain | YKA / AS |
| Non-redundant | True |
| Interacting RNA chains | BC/AS |
| Volume | 261.71 Å3 |
| Hydrophobicity | 0.023 |
| Hydrophilicity | 0.962 |
| Buriedness | 0.639 |
| Don/acc character | 3.516 |
| SiteScore | 0.890 |
| D Score | 0.707 |
| Compound | PAR |
| Residue | . / 3406 |
| Chain | ALA / AS |
| Non-redundant | True |
| Interacting RNA chains | BC/AS |
| Volume | 102.56 Å3 |
| Hydrophobicity | 0.070 |
| Hydrophilicity | 0.939 |
| Buriedness | 0.642 |
| Don/acc character | 2.149 |
| SiteScore | 0.766 |
| D Score | 0.549 |
| Compound | PAR |
| Residue | . / 1802 |
| Chain | ZGB / CM |
| Non-redundant | True |
| Interacting RNA chains | TD/CM |
| Volume | 735.74 Å3 |
| Hydrophobicity | 0.059 |
| Hydrophilicity | 1.109 |
| Buriedness | 0.704 |
| Don/acc character | 3.355 |
| SiteScore | 1.154 |
| D Score | 1.001 |
| Compound | PAR |
| Residue | . / 1803 |
| Chain | AHB / CM |
| Non-redundant | True |
| Interacting RNA chains | TD/CM |
| Volume | 332.37 Å3 |
| Hydrophobicity | 0.182 |
| Hydrophilicity | 1.212 |
| Buriedness | 0.760 |
| Don/acc character | 1.215 |
| SiteScore | 0.873 |
| D Score | 0.592 |